makes_use_of FBbi:00000346 Tue Mar 09 09:32:04 PST 2010 jm the child is an essential component of the parent device, or plays an essential role in performance of the parent function XX:newdbxref the child is an essential component of the parent device, or plays an essential role in performance of the parent function Is a is_a dummy term FBbi:00000000 Sun Mar 07 02:05:26 PST 2010 jm true sample preparation method FBbi:00000001 chemically fixed tissue FBbi:00000002 coagulating-fixative fixed tissue FBbi:00000003 acetone fixed tissue FBbi:00000004 acrolein fixed tissue FBbi:00000005 ethanol fixed tissue FBbi:00000006 methanol fixed tissue FBbi:00000007 crosslinking-fixative fixed tissue FBbi:00000008 ethylene glycol-bis-succinimidyl succinate fixed tissue EGS FBbi:00000009 EGS RELATED formaldehyde fixed tissue FBbi:00000010 glutaraldehyde fixed tissue FBbi:00000011 osmium tetroxide fixed tissue FBbi:00000012 cryofixed tissue FBbi:00000013 unfixed tissue FBbi:00000014 embedded tissue FBbi:00000015 tissue in plastic embedment FBbi:00000016 tissue in acrylic resin embedment FBbi:00000017 tissue in epoxy resin embedment FBbi:00000018 tissue in wax embedment FBbi:00000019 tissue in paraffin embedment FBbi:00000020 tissue in polyester wax embedment FBbi:00000021 tissue in polyethylene glycol embedment FBbi:00000022 unembedded tissue FBbi:00000023 whole mounted tissue FBbi:00000024 living tissue FBbi:00000025 Unfixed fully hydrated tissue, typically employed to monitor dynamic changes in the living state. live-cell imaging RELATED live-cell imaging Unfixed fully hydrated tissue, typically employed to monitor dynamic changes in the living state. XX:ISBN978-087969683-2 sectioned tissue FBbi:00000026 cryostat-sectioned tissue FBbi:00000027 hand-sectioned tissue FBbi:00000028 microtome-sectioned tissue FBbi:00000029 vibratome-sectioned tissue FBbi:00000030 visualization method FBbi:00000031 endogenous substrate, non-vital dye FBbi:00000032 true diagram FBbi:00000033 HA peptide tag FBbi:00000034 cresyl fast violet FBbi:00000035 endogenous substrate, diaminobenzidine FBbi:00000036 true eosin FBbi:00000037 Staining with an aqueous or alcoholic solution of eosin Y,colors eosinophilic structures in various shades of red, pink and orange. The eosinophilic structures are generally composed of intracellular or extracellular protein. The Lewy bodies and Mallory bodies are examples of eosinophilic structures. Most of the cytoplasm is eosinophilic. Red blood cells are stained intensely red. Staining with an aqueous or alcoholic solution of eosin Y,colors eosinophilic structures in various shades of red, pink and orange. The eosinophilic structures are generally composed of intracellular or extracellular protein. The Lewy bodies and Mallory bodies are examples of eosinophilic structures. Most of the cytoplasm is eosinophilic. Red blood cells are stained intensely red. Wikipedia:http\://en.wikipedia.org/wiki/H%26E_stain ethidium bromide FBbi:00000038 fuchsin FBbi:00000039 giemsa FBbi:00000040 hematoxylin FBbi:00000041 The staining method involves application of hemalum, which is a complex formed from aluminium ions and oxidized haematoxylin. This colors nuclei of cells (and a few other objects, such as keratohyalin granules) blue. The staining of nuclei by hemalum does not require the presence of DNA and is probably due to binding of the dye-metal complex to arginine-rich basic nucleoproteins such as histones. The mechanism is different from that of nuclear staining by basic (cationic) dyes such as thionine or toluidine blue. Staining by basic dyes is prevented by chemical or enzymatic extraction of nucleic acids. Such extractions do not prevent staining of nuclei by hemalum. The staining method involves application of hemalum, which is a complex formed from aluminium ions and oxidized haematoxylin. This colors nuclei of cells (and a few other objects, such as keratohyalin granules) blue. The staining of nuclei by hemalum does not require the presence of DNA and is probably due to binding of the dye-metal complex to arginine-rich basic nucleoproteins such as histones. The mechanism is different from that of nuclear staining by basic (cationic) dyes such as thionine or toluidine blue. Staining by basic dyes is prevented by chemical or enzymatic extraction of nucleic acids. Such extractions do not prevent staining of nuclei by hemalum. Wikipedia:http\://en.wikipedia.org/wiki/H%26E_stain methyl green FBbi:00000042 methyl violet FBbi:00000043 nitro blue tetrazolium chloride FBbi:00000044 nuclear fast red FBbi:00000045 orcein FBbi:00000046 propidium iodide FBbi:00000047 PI PI RELATED SYTOX Green FBbi:00000048 toluidine blue FBbi:00000049 endogenous substrate, vital dye FBbi:00000050 true acridine orange AO FBbi:00000051 AO RELATED Hoechst 33342 FBbi:00000052 HO342 Hoechst 33342 Hoechst 33342 RELATED HO342 RELATED cationic colloidal gold FBbi:00000053 CMX rosamine (Mitotracker Red) FBbi:00000054 Mitotracker X Mitotracker X RELATED DiOC6 (3,3'-dihexyloxacarbocyanine iodide) DiOC FBbi:00000055 DiOC RELATED 4',6-diamidino-2-phenylindole (DAPI) DAPI FBbi:00000056 DAPI RELATED lucifer yellow FBbi:00000057 methylene blue FBbi:00000058 Nile blue A FBbi:00000059 Nile red FBbi:00000060 pyronine FBbi:00000061 rhodamine 123 FBbi:00000062 rhodamine B FBbi:00000063 SYTO Blue FBbi:00000064 SYTO Green FBbi:00000065 SYTO Orange FBbi:00000066 SYTO Red FBbi:00000067 YO-PRO-1 FBbi:00000068 endogenous substrate, dye conjugate FBbi:00000069 true endogenous substrate, acidotropic-fluor conjugate FBbi:00000070 LysoTracker true LysoTracker RELATED endogenous substrate, lectin-fluor conjugate FBbi:00000071 true endogenous substrate, lectin-gold conjugate FBbi:00000072 true taxol FBbi:00000073 endogenous substrate, phalloidin-fluor conjugate FBbi:00000074 true exogenous label FBbi:00000075 true genetically encoded enzyme FBbi:00000076 beta-galactosidase FBbi:00000077 lacZ, X-gal RELATED lacZ, X-gal beta-glucuronidase FBbi:00000078 GUS, X-gluc GUS, X-gluc RELATED genetically encoded tag FBbi:00000079 EBFP BFP FBbi:00000080 BFP RELATED ECFP CFP FBbi:00000081 CFP RELATED EGFP FBbi:00000082 GFP GFP RELATED Aequorea victoria red fluorescent protein tag FBbi:00000083 RFP true RELATED RFP EYFP FBbi:00000084 YFP RELATED YFP DsRed DsRed FBbi:00000085 DsRed RELATED c-MYC peptide tag FBbi:00000086 FLAG peptide tag FBbi:00000087 intracellular filling FBbi:00000088 visualization of the connected regions of a cell by filling with a label XX:newdbxref visualization of the connected regions of a cell by filling with a label tissue in vitreous ice embedment FBbi:00000089 Fully hydrated tissue rapidly frozen to produce vitrified water, and maintained continuously below the glass transition temperature of water (approximately -137 deg C Sun Mar 07 02:05:48 PST 2010 jm tissue in amorphous ice embedment RELATED tissue in amorphous ice embedment Fully hydrated tissue rapidly frozen to produce vitrified water, and maintained continuously below the glass transition temperature of water (approximately -137 deg C PubMed:PMID\: 3043536 fluor labeled RNA fill FBbi:00000090 5-SFX fluorescein RNA fill FBbi:00000091 X-rhodamine RNA fill FBbi:00000092 permeabilized tissue FBbi:00000093 Sun Mar 07 02:26:37 PST 2010 Tissue treated to make cell membranes permeable, typically for the purpose of allowing access by exogenous stains or substrates. jm Tissue treated to make cell membranes permeable, typically for the purpose of allowing access by exogenous stains or substrates. XX:newdbxref fluor labeled protein fill FBbi:00000094 fluor conjugated actin fill FBbi:00000095 Alexa Fluor 488 actin fill FBbi:00000096 true Alexa Fluor 568 actin fill FBbi:00000097 true fluoresceine actin fill FBbi:00000098 true rhodamine actin fill FBbi:00000099 true phalloidin FBbi:00000100 Alexa Fluor 350 phalloidin fill FBbi:00000101 true Alexa Fluor 488 phalloidin fill FBbi:00000102 true eosin phalloidin fill FBbi:00000103 true fluoresceine phalloidin fill FBbi:00000104 true Oregon Green 488 phalloidin fill FBbi:00000105 true Oregon Green 514 phalloidin fill FBbi:00000106 true rhodamine phalloidin fill FBbi:00000107 true Texas Red-X phalloidin fill FBbi:00000108 true fluor conjugated tubulin fill FBbi:00000109 Oregon Green 514 tubulin fill FBbi:00000110 true X-rhodamine tubulin fill FBbi:00000111 true probe for lipid FBbi:00000112 DiA FBbi:00000113 DiD FBbi:00000114 DiI FBbi:00000115 DiO FBbi:00000116 DiR FBbi:00000117 miscellaneous fill FBbi:00000118 biotin ethylenediamine fill FBbi:00000119 Neurobiotin Neurobiotin RELATED cobalt fill FBbi:00000120 silver-intensified cobalt fill FBbi:00000121 metabolically incorporated radioisotope FBbi:00000122 [14]C FBbi:00000123 [32]P FBbi:00000124 [33]P FBbi:00000125 [35]S FBbi:00000126 [3]H FBbi:00000127 label conjugated to probe FBbi:00000128 glycerol permeabilized FBbi:00000129 Sun Mar 07 02:37:12 PST 2010 glycerinated tissue jm tissue made permeable by the action of glycerol XX:newdbxref tissue made permeable by the action of glycerol RELATED glycerinated tissue labeled primary antibody FBbi:00000130 primary antibody-enzyme conjugate, substrate FBbi:00000131 true alkaline phosphatase FBbi:00000132 primary antibody-alkaline phosphastase conjugate, DAB FBbi:00000133 true primary antibody-alkaline phosphastase conjugate, ELF 97 phosphate FBbi:00000134 true primary antibody-alkaline phosphastase conjugate, Vector Black FBbi:00000135 true primary antibody-alkaline phosphastase conjugate, Vector Blue FBbi:00000136 true primary antibody-alkaline phosphastase conjugate, Vector Red FBbi:00000137 true horseradish peroxidase FBbi:00000138 primary antibody-horseradish peroxidase, 4-chloro-1-naphthol FBbi:00000139 true primary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole FBbi:00000140 true primary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine FBbi:00000141 true primary antibody-horseradish peroxidase, Vector NovaRed FBbi:00000142 true primary antibody-horseradish peroxidase, Vector SG FBbi:00000143 true primary antibody-horseradish peroxidase, Vector VIP FBbi:00000144 true primary antibody-fluor conjugate FBbi:00000145 true primary antibody-aminomethylcoumarin acetate AMCA FBbi:00000146 true AMCA RELATED primary antibody-Cascade blue FBbi:00000147 true primary antibody-cyanine Cy2 FBbi:00000148 true Cy2 RELATED primary antibody-fluorescein isothiocyanate FBbi:00000149 FITC true FITC RELATED primary antibody-indocarbocyanine Cy3 FBbi:00000150 true Cy3 RELATED primary antibody-indodicarbocyanine Cy5 FBbi:00000151 true Cy5 RELATED primary antibody-rhodamine red-X FBbi:00000152 RRX true RELATED RRX primary antibody-tetramethyl rhodamine isothiocyanate FBbi:00000153 TRITC true RELATED TRITC primary antibody-Texas Red FBbi:00000154 TR true RELATED TR primary antibody-gold conjugate FBbi:00000155 true primary antibody plus labeled secondary antibody FBbi:00000156 secondary antibody-enzyme conjugate, substrate FBbi:00000157 true acid phosphatase FBbi:00000158 secondary antibody-alkaline phosphastase conjugate, DAB FBbi:00000159 true secondary antibody-alkaline phosphastase conjugate, ELF 97 phosphate FBbi:00000160 true secondary antibody-alkaline phosphastase conjugate, Fast Blue B FBbi:00000161 true secondary antibody-alkaline phosphastase conjugate, Fast Red FBbi:00000162 true secondary antibody-alkaline phosphastase conjugate, INT FBbi:00000163 true secondary antibody-alkaline phosphastase conjugate, Magenta Phos FBbi:00000164 true secondary antibody-alkaline phosphastase conjugate, NABP FBbi:00000165 true secondary antibody-alkaline phosphastase conjugate, NAGP FBbi:00000166 true secondary antibody-alkaline phosphastase conjugate, NAMP FBbi:00000167 true secondary antibody-alkaline phosphastase conjugate, NATP FBbi:00000168 true secondary antibody-alkaline phosphastase conjugate, NBT FBbi:00000169 true secondary antibody-alkaline phosphastase conjugate, Vector Black FBbi:00000170 true secondary antibody-alkaline phosphastase conjugate, Vector Blue FBbi:00000171 true secondary antibody-alkaline phosphastase conjugate, Vector Red FBbi:00000172 true secondary antibody-alkaline phosphastase conjugate, BCIP FBbi:00000173 true secondary antibody-beta-galactosidase, X-Gal FBbi:00000174 true secondary antibody-beta-glucuronidase, X-gluc FBbi:00000175 true esterase FBbi:00000176 secondary antibody-esterase, Naphthol-AS-D-chloroacetate FBbi:00000177 true glucose oxidase FBbi:00000178 secondary antibody-glucose oxidase, TNBT FBbi:00000179 true secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine FBbi:00000180 true secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine silver enhanced FBbi:00000181 true secondary antibody-horseradish peroxidase, 4-chloro-1-naphthol FBbi:00000182 true secondary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole FBbi:00000183 true secondary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine FBbi:00000184 true secondary antibody-horseradish peroxidase, Vector NovaRed FBbi:00000185 true secondary antibody-horseradish peroxidase, Vector SG FBbi:00000186 true secondary antibody-horseradish peroxidase, Vector VIP FBbi:00000187 true secondary antibody-phosphatase, Naphthol-AS-BI-phosphate FBbi:00000188 true secondary antibody-fluor conjugate FBbi:00000189 true secondary antibody-Alexa Fluor conjugate FBbi:00000190 true aminomethylcoumarin AMCA FBbi:00000191 AMCA RELATED Cascade blue FBbi:00000192 secondary antibody-cyanine conjugate Cy2 FBbi:00000193 true Cy2 RELATED secondary antibody-diaminotriazinylaminoflorescein conjugate DTAF FBbi:00000194 true DTAF RELATED secondary antibody-fluorescein isothiocyanate conjugate FBbi:00000195 FITC true FITC RELATED secondary antibody-indocarbocyanine conjugate Cy3 FBbi:00000196 true Cy3 RELATED secondary antibody-indodicarbocyanine conjugate Cy5 FBbi:00000197 true Cy5 RELATED secondary antibody-lissamine rhodamine sulfonyl chloride FBbi:00000198 LSRC true LSRC RELATED secondary antibody-rhodamine red-X conjugate FBbi:00000199 RRX true RELATED RRX secondary antibody-tetramethyl rhodamine isothiocyanate conjugate FBbi:00000200 TRITC true RELATED TRITC secondary antibody-Texas red conjugate FBbi:00000201 TR true RELATED TR gold FBbi:00000202 labeled nucleic acid probe FBbi:00000203 true DNA probe FBbi:00000204 biotin labeled DNA probe FBbi:00000205 true digoxigenin labeled DNA probe FBbi:00000206 true fluor labeled DNA probe FBbi:00000207 true BODIPY TR-14-dUTP labeled DNA probe FBbi:00000208 true bromodeoxyuridine labeled DNA probe FBbi:00000209 true fluoresceine-12-dUTP labeled DNA probe FBbi:00000210 true Oregon Green 488-5-dUTP labeled DNA probe FBbi:00000211 true radioisotope labeled DNA probe FBbi:00000212 true [32]P labeled DNA probe FBbi:00000213 true [33]P labeled DNA probe FBbi:00000214 true RNA probe FBbi:00000215 biotin labeled RNA probe FBbi:00000216 true digoxigenin labeled RNA probe FBbi:00000217 true fluoroscein labeled RNA probe FBbi:00000218 true radioisotope labeled RNA probe FBbi:00000219 true [32]P labeled RNA probe FBbi:00000220 true [33]P labeled RNA probe FBbi:00000221 true imaging method FBbi:00000222 graphic illustration FBbi:00000223 computer graphic FBbi:00000224 black and white graphic FBbi:00000225 color graphic FBbi:00000226 grey scale graphic FBbi:00000227 camera lucida assisted graphic FBbi:00000228 free hand graphic FBbi:00000229 line art graphic FBbi:00000230 charcoal pencil graphic FBbi:00000231 colored pencil graphic FBbi:00000232 graphite pencil graphic FBbi:00000233 pen and ink graphic FBbi:00000234 black and white graphic RELATED black and white graphic painted graphic FBbi:00000235 acrylic painted graphic FBbi:00000236 oil painted graphic FBbi:00000237 pastel painted graphic FBbi:00000238 watercolor painted graphic FBbi:00000239 macroscopy FBbi:00000240 methods for imaging objects large enough to be observed by the unaided eye XX:<new dbxref> methods for imaging objects large enough to be observed by the unaided eye microscopy FBbi:00000241 methods for forming images of objects too small to be observed with the unaided eye XX:newdbxref methods for forming images of objects too small to be observed with the unaided eye wide field light micrograph FBbi:00000242 true bright-field microscopy FBbi:00000243 dark-field microscopy FBbi:00000244 imaging with rejection of the unscattered illumination (removal of the zero order component of the diffracted wave) XX:newdbxref imaging with rejection of the unscattered illumination (removal of the zero order component of the diffracted wave) differential interference contrast microscopy DIC FBbi:00000245 Nomarski Nomarski RELATED DIC RELATED fluorescence microscopy FBbi:00000246 phase contrast microscopy FBbi:00000247 polarization microscopy FBbi:00000248 time lapse microscopy FBbi:00000249 narrow field light micrograph FBbi:00000250 true confocal microscopy FBbi:00000251 single-spot confocal microscopy FBbi:00000252 spinning disk confocal microscopy FBbi:00000253 two-photon laser scanning micrograph FBbi:00000254 multi-photon microscopy FBbi:00000255 modes of electron microscopy FBbi:00000256 scanning electron microscopy (SEM) FBbi:00000257 image is formed by scanning the surface of the specimen with a beam of electrons in a raster pattern XX:newdbxref image is formed by scanning the surface of the specimen with a beam of electrons in a raster pattern transmission electron microscopy (TEM) FBbi:00000258 atomic force microscopy FBbi:00000259 the scanning probe is maintained at a fixed distance above the surface e of the specimen by van der Waals forces XX:newdbxref the scanning probe is maintained at a fixed distance above the surface e of the specimen by van der Waals forces X-ray micrograph FBbi:00000260 montage FBbi:00000261 detergent permeabilized FBbi:00000262 Membrane permeabilization by the action of ionic or non-ionic detergents Sun Mar 07 02:37:21 PST 2010 jm Membrane permeabilization by the action of ionic or non-ionic detergents XX:newdbxref solvent permeabilized FBbi:00000263 Sun Mar 07 02:37:29 PST 2010 jm permeabilization due to extraction of lipid from membranes by an organic solvent such as acetone or methanol. XX:<new dbxref> permeabilization due to extraction of lipid from membranes by an organic solvent such as acetone or methanol. saponin permeabilized FBbi:00000264 Saponin, a detergent-like molecule, preferentially forms holes in membranes that contain cholesterol. Sun Mar 07 02:43:41 PST 2010 jm saponized tissue RELATED saponized tissue Saponin, a detergent-like molecule, preferentially forms holes in membranes that contain cholesterol. XX:<new dbxref> recorded image FBbi:00000265 Tue Mar 09 09:57:38 PST 2010 jm methods and devices used for capturing an image of a real object; distinct from images created by artwork micrograph photograph XX:<new dbxref> methods and devices used for capturing an image of a real object; distinct from images created by artwork RELATED micrograph RELATED photograph portrayed image FBbi:00000266 Tue Mar 09 10:04:40 PST 2010 artwork drawing jm methods and devices used for creating images by some form of artwork, as distinct from capturing images by means of some recording device XX:newdbxref methods and devices used for creating images by some form of artwork, as distinct from capturing images by means of some recording device RELATED artwork RELATED drawing animation A form of graphical illustration that changes with time to give a sense of motion or represent dynamic changes in the portrayal. FBbi:00000267 Tue Mar 09 10:12:11 PST 2010 jm A form of graphical illustration that changes with time to give a sense of motion or represent dynamic changes in the portrayal. XX:newdbxref illumination methods FBbi:00000268 Tue Mar 09 10:38:14 PST 2010 jm sources and methods for illumination XX:newdbxref sources and methods for illumination detection methods FBbi:00000269 Tue Mar 09 10:38:14 PST 2010 jm media and devices employed for recording the alterations in the illumination that result from its interaction with the sample XX:newdbxref media and devices employed for recording the alterations in the illumination that result from its interaction with the sample imaged parameters FBbi:00000270 The physical property of the specimen that leads to the modifications of the illumination that are recorded in the image. Tue Mar 09 10:38:14 PST 2010 jm The physical property of the specimen that leads to the modifications of the illumination that are recorded in the image. XX:newdbxref contrast-enhancing methods FBbi:00000271 Tue Mar 09 10:38:14 PST 2010 jm illumination by photons FBbi:00000272 Tue Mar 09 10:46:27 PST 2010 jm illumination by electrons FBbi:00000273 Tue Mar 09 10:46:27 PST 2010 jm illumination by acoustic waves FBbi:00000274 Tue Mar 09 10:46:27 PST 2010 jm illumination by neutrons FBbi:00000275 Tue Mar 09 10:46:27 PST 2010 jm illumination by ions FBbi:00000276 Tue Mar 09 10:46:27 PST 2010 jm widefield illumination FBbi:00000277 Tue Mar 09 10:50:41 PST 2010 illumination that covers the entire field of view of the image-forming lens jm XX:newdbxref illumination that covers the entire field of view of the image-forming lens narrowfield illumination FBbi:00000278 Tue Mar 09 10:50:41 PST 2010 illumination restricted to a small portion of the field of view of the imaging lens; often one or more diffraction limited spots jm XX:newdbxref illumination restricted to a small portion of the field of view of the imaging lens; often one or more diffraction limited spots coherent illumination FBbi:00000279 Tue Mar 09 10:50:41 PST 2010 jm incoherent illumination FBbi:00000280 Tue Mar 09 10:50:41 PST 2010 jm nearfield illumination FBbi:00000281 Tue Mar 09 10:50:41 PST 2010 jm farfield illumination FBbi:00000282 Tue Mar 09 10:50:41 PST 2010 jm continuous illumination FBbi:00000283 Tue Mar 09 10:50:41 PST 2010 jm pulsed illumination FBbi:00000284 Tue Mar 09 10:50:41 PST 2010 illumination that varies with time; often achieved with pulsed lasers for the purpose of generating very-high peak illumination power jm XX:newdbxref illumination that varies with time; often achieved with pulsed lasers for the purpose of generating very-high peak illumination power oblique illumination FBbi:00000285 Tue Mar 09 10:50:41 PST 2010 jm single point scanning FBbi:00000286 Tue Mar 09 10:51:29 PST 2010 illumination by a single spot of light that is scanned across the field of view jm XX:<new dbxref> illumination by a single spot of light that is scanned across the field of view multiple point scanning FBbi:00000287 Tue Mar 09 10:51:29 PST 2010 illumination by multiple points of light simultaneously jm XX:<new dbxref> illumination by multiple points of light simultaneously spinning disk scanning FBbi:00000288 Tue Mar 09 10:52:38 PST 2010 jm scanning by multiple points of light arising from pinholes in a spinning disk that is illuminated by a widefield source XX:<new dbxref> scanning by multiple points of light arising from pinholes in a spinning disk that is illuminated by a widefield source array scanning FBbi:00000289 Multiple points of illumination generated by a fixed array of sources. Tue Mar 09 10:52:38 PST 2010 jm Multiple points of illumination generated by a fixed array of sources. XX:newdbxref hollow-cone illumination FBbi:00000290 Tue Mar 09 11:04:14 PST 2010 illumination parallel or at small angles to the optical axis is attenuated or blocked by a stop jm XX:newdbxref illumination parallel or at small angles to the optical axis is attenuated or blocked by a stop anaxial illumination FBbi:00000291 Illumination is distributed asymmetrically around the optic axis, typically achieved by a non-circular stop placed below the lower lens element and aperture of the condenser. Tue Mar 09 11:04:14 PST 2010 jm : Illumination is distributed asymmetrically around the optic axis, typically achieved by a non-circular stop placed below the lower lens element and aperture of the condenser. darkfield illumination FBbi:00000292 Tue Mar 09 11:04:41 PST 2010 illumination restricted to angles that exceed the acceptance angle of the image-forming lens jm XX:newdbxref illumination restricted to angles that exceed the acceptance angle of the image-forming lens Rheinberg illumination FBbi:00000293 Tue Mar 09 11:04:41 PST 2010 illumination at angles less than the acceptance angle of the image-forming lens is attenuated by a filter to give a colored background of unscattered light; higher angle illumination may be filtered to give a contrasting color jm XX:newdbxref illumination at angles less than the acceptance angle of the image-forming lens is attenuated by a filter to give a colored background of unscattered light; higher angle illumination may be filtered to give a contrasting color charge coupled device (CCD) FBbi:00000294 Tue Mar 09 11:33:49 PST 2010 jm photomultiplier tube (PMT) FBbi:00000295 Tue Mar 09 11:33:49 PST 2010 jm photodiode FBbi:00000296 Tue Mar 09 11:33:49 PST 2010 jm avalanche photodiode (APD) FBbi:00000297 Tue Mar 09 11:33:49 PST 2010 jm silicon intensified target tube (SIT) FBbi:00000298 Tue Mar 09 11:33:49 PST 2010 jm intensified SIT (ISIT) FBbi:00000299 Tue Mar 09 11:33:49 PST 2010 jm intensified CCD (ICCD) FBbi:00000300 Tue Mar 09 11:33:49 PST 2010 jm electron multiplying CCD (EMCCD) FBbi:00000301 Tue Mar 09 11:33:49 PST 2010 jm electron bombardment CCD (EBCCD) FBbi:00000302 Tue Mar 09 11:33:49 PST 2010 jm film FBbi:00000303 Tue Mar 09 11:33:49 PST 2010 jm complementary metal oxide semiconductor (CMOS) FBbi:00000304 Tue Mar 09 11:33:49 PST 2010 jm piezo-electric device FBbi:00000305 Tue Mar 09 11:33:49 PST 2010 jm wide-field detection FBbi:00000306 Tue Mar 09 00:45:35 PST 2010 jm narrow-field detection FBbi:00000307 Tue Mar 09 00:45:35 PST 2010 jm absorption of illumination FBbi:00000308 Tue Mar 09 03:11:47 PST 2010 jm inelastic scattering FBbi:00000309 Tue Mar 09 03:11:47 PST 2010 jm elastic scattering FBbi:00000310 Tue Mar 09 03:11:47 PST 2010 jm refractive index FBbi:00000311 Tue Mar 09 03:11:47 PST 2010 jm optical path length gradient FBbi:00000312 Tue Mar 09 03:11:47 PST 2010 jm retardance FBbi:00000313 Tue Mar 09 03:11:47 PST 2010 jm stiffness FBbi:00000314 Tue Mar 09 03:11:47 PST 2010 jm electron density FBbi:00000315 Tue Mar 09 03:11:47 PST 2010 jm fluorescence emission FBbi:00000316 Tue Mar 09 03:11:47 PST 2010 jm sub-nanosecond time-resolved fluorescence emission) FBbi:00000317 Tue Mar 09 03:11:47 PST 2010 jm fluorescence polarization (polarization angle resolved fluorescence emission) FBbi:00000318 Tue Mar 09 03:11:47 PST 2010 jm chemical composition FBbi:00000319 Tue Mar 09 03:11:47 PST 2010 jm elevation FBbi:00000320 Tue Mar 09 03:11:47 PST 2010 jm resolution-enhancing methods FBbi:00000321 Tue Mar 09 03:12:34 PST 2010 jm methods for increasing the resolution beyond the classical Abbe diffraction limit XX:newdbxref methods for increasing the resolution beyond the classical Abbe diffraction limit optical methods FBbi:00000322 Tue Mar 09 03:14:53 PST 2010 jm computational methods FBbi:00000323 Tue Mar 09 03:14:53 PST 2010 jm in-focus phase contrast FBbi:00000324 Tue Mar 09 03:20:14 PST 2010 jm defocus phase contrast FBbi:00000325 Tue Mar 09 03:20:14 PST 2010 jm Wollaston prism FBbi:00000326 Tue Mar 09 03:20:14 PST 2010 a birefringent optical element typically used to split polarized illumination into two sets of parallel but displaced rays jm XX:newdbxref a birefringent optical element typically used to split polarized illumination into two sets of parallel but displaced rays Hoffman modulation FBbi:00000327 Tue Mar 09 03:20:14 PST 2010 jm single sideband edge enhancement (SSBE) FBbi:00000328 Tue Mar 09 03:20:14 PST 2010 jm interference reflection contrast (IRM) FBbi:00000329 Tue Mar 09 03:20:14 PST 2010 jm interference contrast FBbi:00000330 Tue Mar 09 03:20:14 PST 2010 jm polarization contrast FBbi:00000331 Tue Mar 09 03:20:14 PST 2010 jm structured illumination microscopy (SIM) FBbi:00000332 Tue Mar 09 03:24:02 PST 2010 jm point-localization methods FBbi:00000333 Tue Mar 09 03:24:02 PST 2010 jm stimulated emission depletion (STED) FBbi:00000334 Tue Mar 09 03:24:02 PST 2010 jm PALM (photoactivation localization microscopy) FBbi:00000335 Tue Mar 09 03:32:12 PST 2010 jm STORM (stochastic optical reconstruction microscopy) FBbi:00000336 Tue Mar 09 03:32:12 PST 2010 jm FIONA (fluorescence imaging with one nanometer accuracy) FBbi:00000337 Tue Mar 09 03:32:12 PST 2010 jm DOPI (defocussed orientation and position imaging) FBbi:00000338 Tue Mar 09 03:32:12 PST 2010 jm PAINT (point accumulation for imaging in nanoscale topography) FBbi:00000339 Tue Mar 09 03:32:12 PST 2010 jm saturated structured-illumination microscopic (SSIM) FBbi:00000340 Tue Mar 09 03:32:29 PST 2010 jm structured illumination used at sufficiently high power to cause significant ground-state depletion of the imaged fluorophore, thus allowing for non-linear resolution enhancement XX:<new dbxref> structured illumination used at sufficiently high power to cause significant ground-state depletion of the imaged fluorophore, thus allowing for non-linear resolution enhancement UV/visible/IR illumination FBbi:00000341 Tue Mar 09 03:51:49 PST 2010 jm X-ray illumination FBbi:00000342 Tue Mar 09 03:51:49 PST 2010 jm microscopy with lenses FBbi:00000343 Tue Mar 09 04:04:04 PST 2010 jm scanning probe microscopy FBbi:00000344 Tue Mar 09 04:04:04 PST 2010 imaging by means of a physical probe that passes over the sample jm XX:newdbxref imaging by means of a physical probe that passes over the sample modes of light microscopy FBbi:00000345 Tue Mar 09 04:18:03 PST 2010 jm scanning tunneling microscopy FBbi:00000347 Tue Mar 09 10:19:35 PST 2010 jm nearfield scanning optical microscopy (ANSOM) FBbi:00000348 Tue Mar 09 10:19:35 PST 2010 jm ANSOM Aperture-less NSOM. FBbi:00000349 Tue Mar 09 10:20:01 PST 2010 jm Aperture-less NSOM. XX:newdbxref polarized light illumination FBbi:00000350 Tue Mar 09 10:23:41 PST 2010 jm orientation-independent polarization microscopy FBbi:00000351 Tue Mar 09 10:25:08 PST 2010 jm polarization-sensitive detection FBbi:00000352 Tue Mar 09 10:27:11 PST 2010 jm modified objective lens FBbi:00000353 Tue Mar 09 10:41:27 PST 2010 jm uses an objective with extra components to manipulate the wave front in the plane of the objective aperture XX:newdbxref uses an objective with extra components to manipulate the wave front in the plane of the objective aperture linear methods FBbi:00000354 Tue Mar 09 11:09:35 PST 2010 a computational method that is linear in the mathematical sense, meaning that image intensity is conserved and the data remain suitable for all quantitative analyses jm XX:newdbxref a computational method that is linear in the mathematical sense, meaning that image intensity is conserved and the data remain suitable for all quantitative analyses non-linear methods FBbi:00000355 Tue Mar 09 11:09:35 PST 2010 computational method that are mathematically non-linear; image intensity is not conserved, and the data are in general not suitable for quantitative analyses of pixel values jm XX:newdbxref computational method that are mathematically non-linear; image intensity is not conserved, and the data are in general not suitable for quantitative analyses of pixel values Wiener filter FBbi:00000356 Tue Mar 09 11:10:59 PST 2010 jm 3D-deconvolution FBbi:00000357 Tue Mar 09 11:10:59 PST 2010 jm no-neighbors deblurring FBbi:00000358 Tue Mar 09 11:11:56 PST 2010 jm nearest-neighbors deblurring FBbi:00000359 Tue Mar 09 11:11:56 PST 2010 jm constrained iterative deconvolution FBbi:00000360 Tue Mar 09 11:19:41 PST 2010 jm maximum likelihood deconvolution FBbi:00000361 Tue Mar 09 11:19:41 PST 2010 jm blind deconvolution FBbi:00000362 Tue Mar 09 11:19:41 PST 2010 jm exhaustive photon reassignment FBbi:00000363 Tue Mar 09 11:19:42 PST 2010 jm light-sheet illumination FBbi:00000364 Thu Mar 11 10:06:20 PST 2010 illumination in the form of a thin sheet of light directed perpendicular to the optic axis jm XX:<new dbxref> illumination in the form of a thin sheet of light directed perpendicular to the optic axis FLIP FBbi:00000365 Fluorescence loss in photobleaching; a method of determining whether two populations of fluorophore are in diffusive communication with one another by observing the decrease in brightness of one population when the other population is subjected to continuous photobleaching. Thu Mar 11 10:09:33 PST 2010 jm Fluorescence loss in photobleaching; a method of determining whether two populations of fluorophore are in diffusive communication with one another by observing the decrease in brightness of one population when the other population is subjected to continuous photobleaching. XX:newdbxref FRAP FBbi:00000366 Fluorescence loss in photobleaching; a method of determining the rate and extent of exchange between a localized population of fluorophore and a non-localized diffusible pool, by observing the rate of recovery of brightness of the localized population after photobleaching. Thu Mar 11 10:09:33 PST 2010 jm Fluorescence loss in photobleaching; a method of determining the rate and extent of exchange between a localized population of fluorophore and a non-localized diffusible pool, by observing the rate of recovery of brightness of the localized population after photobleaching. XX:-new-dbxref- FRET FBbi:00000367 Fluorescence (or Forster) resonance energy transfer; a method of estimating the distance between two fluorophores by measuring the extent of non-radiative energy transfer between the two. Experimentally, this involves selective excitation of one while observing emission from the other. Thu Mar 11 10:09:33 PST 2010 jm Fluorescence (or Forster) resonance energy transfer; a method of estimating the distance between two fluorophores by measuring the extent of non-radiative energy transfer between the two. Experimentally, this involves selective excitation of one while observing emission from the other. XX:newdbxref FLIM FBbi:00000368 Thu Mar 11 10:09:33 PST 2010 jm SPIM FBbi:00000369 Thu Mar 11 10:09:33 PST 2010 jm single (or selective) plane illumination. XX:<new dbxref> single (or selective) plane illumination. CARS FBbi:00000370 Thu Mar 11 10:13:20 PST 2010 coherent Raman anti-Stokes microscopy jm XX:newdbxref coherent Raman anti-Stokes microscopy OCT FBbi:00000371 Thu Mar 11 10:32:19 PST 2010 jm optical coherence tomography; an interferometric method of imaging using back-scattered photons (elastic scattering) XX:newdbxref optical coherence tomography; an interferometric method of imaging using back-scattered photons (elastic scattering) secondary_electron imaging FBbi:00000372 Fri Mar 12 08:34:44 PST 2010 image created using the electrons generated by ionization of a sample due to inelastic scattering of the primary beam of radiation jm XX:<new dbxref> image created using the electrons generated by ionization of a sample due to inelastic scattering of the primary beam of radiation back-scattered_electron imaging FBbi:00000373 Fri Mar 12 08:40:37 PST 2010 imaged formed using electrons undergoing elastic scattering at very high angles, with emission of characteristic X-rays jm XX:newdbxref imaged formed using electrons undergoing elastic scattering at very high angles, with emission of characteristic X-rays detection of photons FBbi:00000374 Fri Mar 12 08:54:56 PST 2010 jm detection of electrons FBbi:00000375 Fri Mar 12 08:54:56 PST 2010 jm detection of acoustic waves FBbi:00000376 Fri Mar 12 08:54:56 PST 2010 jm detection of current induced in the specimen FBbi:00000377 Fri Mar 12 08:54:56 PST 2010 jm UV/visible/IR photons FBbi:00000378 Fri Mar 12 08:55:29 PST 2010 jm X-ray photons FBbi:00000379 Fri Mar 12 08:55:29 PST 2010 jm scanning-transmission electron microscopy FBbi:00000380 Fri Mar 12 09:12:36 PST 2010 jm EELS imaging EFTEM energy filtered TEM ESI electron spectroscopic imaging FBbi:00000381 Fri Mar 12 09:16:40 PST 2010 jm EFTEM energy filtered TEM RELATED ESI electron spectroscopic imaging RELATED EDAX imaging FBbi:00000382 Fri Mar 12 09:16:40 PST 2010 jm specimen_modifying_illumination FBbi:00000383 Fri Mar 12 09:32:53 PST 2010 Illumination used for the purpose of inducing some observable change in the specimen during the course of an imaging session. This illumination may or may not be the same as the illumination used for imaging. Typically used in conjunction with live-cell imaging jm Illumination used for the purpose of inducing some observable change in the specimen during the course of an imaging session. This illumination may or may not be the same as the illumination used for imaging. Typically used in conjunction with live-cell imaging XX:<new dbxref> photo-bleaching illumination FBbi:00000384 Fri Mar 12 10:06:46 PST 2010 jm photo-ablation illumination FBbi:00000385 Fri Mar 12 10:06:46 PST 2010 jm photo-switching illumination FBbi:00000386 Fri Mar 12 10:06:46 PST 2010 jm photo-activation illumination FBbi:00000387 Fri Mar 12 10:06:46 PST 2010 jm uncaging illumination FBbi:00000388 Fri Mar 12 10:06:46 PST 2010 jm trapping illumination FBbi:00000389 Fri Mar 12 10:06:46 PST 2010 jm emission-depletion illumination FBbi:00000390 Fri Mar 12 10:06:46 PST 2010 jm slit-scanning illumination FBbi:00000391 Fri Mar 12 10:31:26 PST 2010 illumination in the shape of a thin line that is swept over the field of view jm XX:<new dbxref> illumination in the shape of a thin line that is swept over the field of view slit-scan confocal FBbi:00000392 Fri Mar 12 10:32:36 PST 2010 illumination and detection via a thin slit jm XX:<new dbxref> illumination and detection via a thin slit array-scan confocal FBbi:00000393 Fixed array of sources focused to an array of spots that is swept over the specimen in raster fashion Fri Mar 12 10:35:43 PST 2010 jm Fixed array of sources focused to an array of spots that is swept over the specimen in raster fashion XX:newdbxref spot detectors FBbi:00000394 Fri Mar 12 10:39:24 PST 2010 jm area detectors FBbi:00000395 Fri Mar 12 10:39:24 PST 2010 jm visualization of contiguous regions FBbi:00000396 Sun Mar 14 08:38:50 PDT 2010 jm methods of visualization that differentiate between different regions or surfaces of the specimen based on contiguity XX:newdbxref methods of visualization that differentiate between different regions or surfaces of the specimen based on contiguity visualization by chemical attribute FBbi:00000397 Sun Mar 14 08:38:50 PDT 2010 jm methods of visualization that differentiate regions of the specimen on the basis of their chemical properties XX:<new dbxref> methods of visualization that differentiate regions of the specimen on the basis of their chemical properties shadowing and plating FBbi:00000398 Sun Mar 14 08:44:06 PDT 2010 jm visualization by depositing a label on the surface of a specimen uniformly (plating), or from a particular direction so that surface topography becomes visible (shadowing) XX:<new dbxref> visualization by depositing a label on the surface of a specimen uniformly (plating), or from a particular direction so that surface topography becomes visible (shadowing) negative staining FBbi:00000399 Sun Mar 14 08:44:06 PDT 2010 jm visualization by exclusion of a stain in which the specimen is immersed; compare with \"positive staining. XX:newdbxref visualization by exclusion of a stain in which the specimen is immersed; compare with \"positive staining. sequence-specific nucleic acid probes FBbi:00000400 Sun Mar 14 09:07:35 PDT 2010 jm antibodies FBbi:00000401 Sun Mar 14 09:07:35 PDT 2010 jm lectins FBbi:00000402 Sun Mar 14 09:07:35 PDT 2010 jm small-molecule probe FBbi:00000403 Sun Mar 14 09:07:35 PDT 2010 jm fluorescent dextran fill FBbi:00000404 Sun Mar 14 10:42:36 PDT 2010 jm fluorescent protein tag FBbi:00000405 Sun Mar 14 10:54:20 PDT 2010 jm probes for nucleic acid FBbi:00000406 Sun Mar 14 09:25:57 PDT 2010 jm small genetically encoded tags FBbi:00000407 Sun Mar 14 11:10:25 PDT 2010 jm probe for protein FBbi:00000408 Sun Mar 14 09:25:57 PDT 2010 jm organelle-specific probe FBbi:00000409 Sun Mar 14 09:25:57 PDT 2010 jm macromolecular probe FBbi:00000410 Sun Mar 14 09:26:11 PDT 2010 jm probe for mitochondria FBbi:00000411 Sun Mar 14 09:28:19 PDT 2010 jm probe for endoplasmic reticulum FBbi:00000412 Sun Mar 14 09:28:19 PDT 2010 jm probe for Golgi FBbi:00000413 Sun Mar 14 09:28:19 PDT 2010 jm probe for lysosomes FBbi:00000414 Sun Mar 14 09:28:19 PDT 2010 jm stain with broad specificity FBbi:00000415 Mon Mar 15 11:51:34 PDT 2010 jm positive staining RELATED positive staining tetracysteine tag FBbi:00000416 Sun Mar 14 11:12:03 PDT 2010 jm Hoechst 33258 FBbi:00000417 Sun Mar 14 09:33:18 PDT 2010 jm genetically encoded biotin tag FBbi:00000418 Sun Mar 14 11:12:03 PDT 2010 jm freeze_fracture/freeze_etch FBbi:00000419 Wed Mar 17 01:55:02 PDT 2010 jm fluorescent proteins derived from Aequorea victoria FBbi:00000420 Wed Mar 17 01:59:59 PDT 2010 jm membrane-permeant probe FBbi:00000421 Sun Mar 14 09:33:53 PDT 2010 jm membrane impermeant probe FBbi:00000422 Sun Mar 14 09:33:53 PDT 2010 jm acridine homodimer FBbi:00000423 Sun Mar 14 09:42:34 PDT 2010 jm 7-amino-actinomycin D FBbi:00000424 Sun Mar 14 09:42:34 PDT 2010 jm conconavalin A FBbi:00000425 Sun Mar 14 09:48:57 PDT 2010 jm wheat germ agglutinin FBbi:00000426 Sun Mar 14 09:48:57 PDT 2010 jm Phaseolus vulgaris lectin PHA-L) FBbi:00000427 Sun Mar 14 09:48:57 PDT 2010 jm Arachis hypogaea (PNA) FBbi:00000428 Sun Mar 14 09:48:57 PDT 2010 jm Helix pomatia agglutinin FBbi:00000429 Sun Mar 14 09:48:57 PDT 2010 jm soybean agglutinin FBbi:00000430 Sun Mar 14 09:48:57 PDT 2010 jm cholera toxin B FBbi:00000431 Sun Mar 14 09:48:57 PDT 2010 jm peptide-nucleic acid probe FBbi:00000432 Sun Mar 14 09:52:30 PDT 2010 jm fluorescent proteins derived from Anthozoa FBbi:00000433 Wed Mar 17 01:59:59 PDT 2010 jm optical highlighters FBbi:00000434 Wed Mar 17 01:59:59 PDT 2010 jm Blue fluorescent proteins from Aequorea victoria FBbi:00000435 Wed Mar 17 02:01:22 PDT 2010 jm Cyan fluorescent proteins from Aequorea FBbi:00000436 Wed Mar 17 02:01:22 PDT 2010 jm Green fluorescent proteins from Aequorea FBbi:00000437 Wed Mar 17 02:01:22 PDT 2010 jm DiIC16 FBbi:00000438 Sun Mar 14 10:15:00 PDT 2010 jm Yellow fluorescent proteins from Aequorea FBbi:00000439 Wed Mar 17 02:01:22 PDT 2010 jm Alexa Fluor 488 FBbi:00000440 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 546 FBbi:00000441 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 568 FBbi:00000442 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 555 FBbi:00000443 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 594 FBbi:00000444 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 610 FBbi:00000445 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 633 FBbi:00000446 Sun Mar 14 10:22:41 PDT 2010 jm Alexa Fluor 647 FBbi:00000447 Sun Mar 14 10:22:41 PDT 2010 jm Cy2 FBbi:00000448 Sun Mar 14 10:22:41 PDT 2010 jm Cy3 FBbi:00000449 Sun Mar 14 10:22:41 PDT 2010 jm Cy5 FBbi:00000450 Sun Mar 14 10:22:41 PDT 2010 jm Fluorescein (FITC) FBbi:00000451 Sun Mar 14 10:22:41 PDT 2010 jm Rhodamine FBbi:00000452 Sun Mar 14 10:22:41 PDT 2010 jm TexasRed FBbi:00000453 Sun Mar 14 10:22:41 PDT 2010 fluorophore with ex/em 589/615 jm XX: fluorophore with ex/em 589/615 Tetramethyl rhodamine (TRITC) FBbi:00000454 Sun Mar 14 10:22:41 PDT 2010 fluorophore derivative of rhodamine with ex/em 547/572 jm XX: fluorophore derivative of rhodamine with ex/em 547/572 fluorescent labels FBbi:00000455 Sun Mar 14 10:25:58 PDT 2010 jm enzyme labels FBbi:00000456 Sun Mar 14 10:25:58 PDT 2010 jm electron dense labels FBbi:00000457 Sun Mar 14 10:25:58 PDT 2010 jm biotin FBbi:00000458 Sun Mar 14 10:25:58 PDT 2010 jm affinity for specific proteins FBbi:00000459 Sun Mar 14 10:28:34 PDT 2010 jm non-specific protein affinity FBbi:00000460 Sun Mar 14 10:28:34 PDT 2010 jm AzuriteFP FBbi:00000461 Wed Mar 17 02:09:45 PDT 2010 jm SiriusFP FBbi:00000462 Wed Mar 17 02:09:45 PDT 2010 jm non-immunological protein probes FBbi:00000463 Sun Mar 14 10:32:01 PDT 2010 jm alpha-bungarotoxin FBbi:00000464 Sun Mar 14 10:36:52 PDT 2010 jm botulinum toxin FBbi:00000465 Sun Mar 14 10:36:52 PDT 2010 jm tetrodotoxin FBbi:00000466 Sun Mar 14 10:37:23 PDT 2010 jm batrachatoxin FBbi:00000467 Sun Mar 14 10:37:23 PDT 2010 jm CeruleanFP FBbi:00000468 Wed Mar 17 02:10:21 PDT 2010 jm CyPet FBbi:00000469 Wed Mar 17 02:10:21 PDT 2010 jm SCFP FBbi:00000470 Wed Mar 17 02:10:21 PDT 2010 jm EmeraldFP FBbi:00000471 Wed Mar 17 02:11:07 PDT 2010 jm SuperfolderFP FBbi:00000472 Wed Mar 17 02:11:07 PDT 2010 jm T-SapphireFP FBbi:00000473 Wed Mar 17 02:11:07 PDT 2010 jm CitrineFP FBbi:00000474 Wed Mar 17 02:14:30 PDT 2010 jm SYFP FBbi:00000475 Wed Mar 17 02:14:30 PDT 2010 jm TopazFP FBbi:00000476 Wed Mar 17 02:14:30 PDT 2010 jm VenusFP FBbi:00000477 Wed Mar 17 02:14:30 PDT 2010 jm yPet FBbi:00000478 Wed Mar 17 02:14:30 PDT 2010 jm Blue fluorescent proteins from Anthozoa FBbi:00000479 Wed Mar 17 02:16:24 PDT 2010 jm Cyan fluorescent proteins from Anthozoa FBbi:00000480 Wed Mar 17 02:16:24 PDT 2010 jm Green fluorescent proteins from Anthozoa FBbi:00000481 Wed Mar 17 02:16:24 PDT 2010 jm Orange fluorescent proteins from Anthozoa FBbi:00000482 Wed Mar 17 02:16:24 PDT 2010 jm Red fluorescent proteins from Anthozoa FBbi:00000483 Wed Mar 17 02:16:24 PDT 2010 jm Far-red fluorescent proteins from Anthozoa FBbi:00000484 Wed Mar 17 02:16:24 PDT 2010 jm Yellow fluorescent proteins from Anthozoa FBbi:00000485 Wed Mar 17 02:16:24 PDT 2010 jm mTagBFP FBbi:00000486 Wed Mar 17 02:16:38 PDT 2010 jm AmCyanFP FBbi:00000487 Wed Mar 17 02:17:42 PDT 2010 jm mCyFP FBbi:00000488 Wed Mar 17 02:17:42 PDT 2010 jm mTFP1 FBbi:00000489 Wed Mar 17 02:17:42 PDT 2010 jm TagCFP FBbi:00000490 Wed Mar 17 02:17:42 PDT 2010 jm AQ143 FBbi:00000491 Wed Mar 17 02:19:04 PDT 2010 jm HcRed-tandemFP FBbi:00000492 Wed Mar 17 02:19:04 PDT 2010 jm KatushkaFP FBbi:00000493 Wed Mar 17 02:19:04 PDT 2010 jm mKateFP FBbi:00000494 Wed Mar 17 02:19:04 PDT 2010 jm mKate2FP FBbi:00000495 Wed Mar 17 02:19:04 PDT 2010 jm mPlumFP FBbi:00000496 Wed Mar 17 02:19:04 PDT 2010 jm tdKatuskaFP FBbi:00000497 Wed Mar 17 02:19:04 PDT 2010 jm tdRFP639 FBbi:00000498 Wed Mar 17 02:19:04 PDT 2010 jm AceFP FBbi:00000499 Wed Mar 17 02:20:00 PDT 2010 jm Azami GreenFP FBbi:00000500 Wed Mar 17 02:20:00 PDT 2010 jm CopGFP FBbi:00000501 Wed Mar 17 02:20:00 PDT 2010 jm mWasabiFP FBbi:00000502 Wed Mar 17 02:20:00 PDT 2010 jm TagGFP FBbi:00000503 Wed Mar 17 02:20:00 PDT 2010 jm TagGFP2 FBbi:00000504 Wed Mar 17 02:20:00 PDT 2010 jm ZsGreenFP FBbi:00000505 Wed Mar 17 02:20:00 PDT 2010 jm DsRed-ExpressFP FBbi:00000506 Wed Mar 17 02:22:53 PDT 2010 jm DsRed-Express2FP FBbi:00000507 Wed Mar 17 02:22:53 PDT 2010 jm DsRed-MaxFP FBbi:00000508 Wed Mar 17 02:22:53 PDT 2010 jm DsRed-monomerFP FBbi:00000509 Wed Mar 17 02:22:53 PDT 2010 jm DsRed2FP FBbi:00000510 Wed Mar 17 02:22:53 PDT 2010 jm dTomatoFP FBbi:00000511 Wed Mar 17 02:22:53 PDT 2010 jm Kusabira OrangeFP FBbi:00000512 Wed Mar 17 02:22:53 PDT 2010 jm Kusabira OrangeFP2 FBbi:00000513 Wed Mar 17 02:22:53 PDT 2010 jm mOrangeFP FBbi:00000514 Wed Mar 17 02:22:53 PDT 2010 jm mOrange2FP FBbi:00000515 Wed Mar 17 02:22:53 PDT 2010 jm TagRFP FBbi:00000516 Wed Mar 17 02:22:53 PDT 2010 jm TagRFP-T FBbi:00000517 Wed Mar 17 02:22:53 PDT 2010 jm tdTomatoFP FBbi:00000518 Wed Mar 17 02:22:53 PDT 2010 jm turboRFP FBbi:00000519 Wed Mar 17 02:22:53 PDT 2010 jm AsRed2FP FBbi:00000520 Wed Mar 17 02:24:26 PDT 2010 jm eqFP611 FBbi:00000521 Wed Mar 17 02:24:26 PDT 2010 jm HcRed1FP FBbi:00000522 Wed Mar 17 02:24:26 PDT 2010 jm JRedFP FBbi:00000523 Wed Mar 17 02:24:26 PDT 2010 jm mAppleFP FBbi:00000524 Wed Mar 17 02:24:26 PDT 2010 jm mCherryFP FBbi:00000525 Wed Mar 17 02:24:26 PDT 2010 jm mRasberryFP FBbi:00000526 Wed Mar 17 02:24:26 PDT 2010 jm mRFP1 FBbi:00000527 Wed Mar 17 02:24:26 PDT 2010 jm mRubyFP FBbi:00000528 Wed Mar 17 02:24:26 PDT 2010 jm mStrawberryFP FBbi:00000529 Wed Mar 17 02:24:26 PDT 2010 jm tdRFP611 FBbi:00000530 Wed Mar 17 02:24:26 PDT 2010 jm PhiYFP FBbi:00000531 Wed Mar 17 02:25:15 PDT 2010 jm TagYFP FBbi:00000532 Wed Mar 17 02:25:15 PDT 2010 jm TurboYFP FBbi:00000533 Wed Mar 17 02:25:15 PDT 2010 jm ZsYellowFP FBbi:00000534 Wed Mar 17 02:25:15 PDT 2010 jm fluorescent protein timers FBbi:00000535 Wed Mar 17 02:27:50 PDT 2010 jm photoactivatable fluorescent proteins FBbi:00000536 Wed Mar 17 02:27:50 PDT 2010 jm photoconvertible fluorescent proteins FBbi:00000537 Wed Mar 17 02:27:50 PDT 2010 jm photoconvertible/photoswitchable fluorescent proteins FBbi:00000538 Wed Mar 17 02:27:50 PDT 2010 jm photoswitchable fluorescent proteins FBbi:00000539 Wed Mar 17 02:27:50 PDT 2010 jm DsRed-ES FP FBbi:00000540 Wed Mar 17 02:29:47 PDT 2010 jm Fast-FT FBbi:00000541 Wed Mar 17 02:29:47 PDT 2010 jm Medium-FT FBbi:00000542 Wed Mar 17 02:29:47 PDT 2010 jm Slow-FT FBbi:00000543 Wed Mar 17 02:29:47 PDT 2010 jm PA-GFP FBbi:00000544 Wed Mar 17 02:31:26 PDT 2010 jm PA-CFP FBbi:00000545 Wed Mar 17 02:31:26 PDT 2010 jm PA-mCherry1FP FBbi:00000546 Wed Mar 17 02:31:26 PDT 2010 jm PA-mRFP FBbi:00000547 Wed Mar 17 02:31:26 PDT 2010 jm Phamret FBbi:00000548 Wed Mar 17 02:31:26 PDT 2010 jm Dendra2FP FBbi:00000549 Wed Mar 17 02:32:35 PDT 2010 jm dEOSFP FBbi:00000550 Wed Mar 17 02:32:35 PDT 2010 jm KaedeFP FBbi:00000551 Wed Mar 17 02:32:35 PDT 2010 jm mEOS2FP FBbi:00000552 Wed Mar 17 02:32:35 PDT 2010 jm mKikGR FBbi:00000553 Wed Mar 17 02:32:35 PDT 2010 jm wtEOSFP FBbi:00000554 Wed Mar 17 02:32:35 PDT 2010 jm wtKIikGR FBbi:00000555 Wed Mar 17 02:32:35 PDT 2010 jm IrisFP FBbi:00000556 Wed Mar 17 02:32:44 PDT 2010 jm bsDronpa FBbi:00000557 Wed Mar 17 02:34:12 PDT 2010 jm Dronpa FBbi:00000558 Wed Mar 17 02:34:12 PDT 2010 jm Dronpa-3 FBbi:00000559 Wed Mar 17 02:34:12 PDT 2010 jm E2GFP FBbi:00000560 Wed Mar 17 02:34:12 PDT 2010 jm KFP1 FBbi:00000561 Wed Mar 17 02:34:12 PDT 2010 jm mTFP0.7 FBbi:00000562 Wed Mar 17 02:34:12 PDT 2010 jm PadronFP FBbi:00000563 Wed Mar 17 02:34:12 PDT 2010 jm rsCherryFP FBbi:00000564 Wed Mar 17 02:34:12 PDT 2010 jm rsCherryRevFP FBbi:00000565 Wed Mar 17 02:34:12 PDT 2010 jm rsFastLimeFP FBbi:00000566 Wed Mar 17 02:34:12 PDT 2010 jm optically-dense stain FBbi:00000567 Tue Apr 27 10:29:56 PDT 2010 jm electron-dense stain FBbi:00000568 Tue Apr 27 10:29:56 PDT 2010 jm uranyl salt FBbi:00000569 Tue Apr 27 10:38:31 PDT 2010 jm lead salt FBbi:00000570 Tue Apr 27 10:38:31 PDT 2010 jm osmium tetroxide FBbi:00000571 Tue Apr 27 10:38:31 PDT 2010 jm potassium permanganate FBbi:00000572 Tue Apr 27 10:38:31 PDT 2010 jm uranium compound FBbi:00000573 Tue Apr 27 10:39:43 PDT 2010 jm molybdenum compound FBbi:00000574 Tue Apr 27 10:39:43 PDT 2010 jm tungsten compound FBbi:00000575 Tue Apr 27 10:39:43 PDT 2010 jm aurothioglucose FBbi:00000576 Tue Apr 27 10:39:43 PDT 2010 jm other negative stain FBbi:00000577 Wed Apr 28 06:06:52 PDT 2010 jm other radioisotope FBbi:00000578 Wed Apr 28 06:08:02 PDT 2010 jm isolated subcellular component A fragment of a cell, subcellular organelle, or macromolecular complex. FBbi:00000579 Wed Apr 28 06:08:42 PDT 2010 jm A fragment of a cell, subcellular organelle, or macromolecular complex. XX:newdbxref secondary electron generation FBbi:00000580 Tue May 04 00:25:14 PDT 2010 electrons generated by inelastic scattering of other radiation, the primary radiation. jm XX: electrons generated by inelastic scattering of other radiation, the primary radiation. critical_point dried specimen FBbi:00000581 Tue May 04 00:31:12 PDT 2010 jm specimen from which water has been removed by a process that avoids liquid-gas and solid-gas phase transitions. XX: specimen from which water has been removed by a process that avoids liquid-gas and solid-gas phase transitions. unprocessed raw data FBbi:00000582 Tue May 04 00:42:17 PDT 2010 data as acquired, with no alterations that change the pixel values. jm XX: data as acquired, with no alterations that change the pixel values. lyophilized specimen FBbi:00000583 Tue May 04 00:49:31 PDT 2010 jm specimen from which water has been removed by evaporation under vacuum at a temperature below freezing. XX: specimen from which water has been removed by evaporation under vacuum at a temperature below freezing. X-Rhodamine FBbi:00000584 Tue May 04 09:02:54 PDT 2010 fluorophore derivative of rhodamine with ex/em 580/605 jm XX: fluorophore derivative of rhodamine with ex/em 580/605 serial block face SEM (SBFSEM) A method of reconstructing 3D structure by combining serial sectioning with scanning EM. FBbi:00000585 Thu Sep 02 05:10:33 PDT 2010 jm A method of reconstructing 3D structure by combining serial sectioning with scanning EM. PMID :15514700 elastic scattering of electrons FBbi:00000586 Fri Sep 03 08:42:47 PDT 2010 jm elastic scattering of photons FBbi:00000587 Fri Sep 03 08:42:47 PDT 2010 jm inelastic scattering of electrons FBbi:00000588 Fri Sep 03 08:43:42 PDT 2010 jm inelastic scattering of photons (Raman scattering) FBbi:00000589 Fri Sep 03 08:43:42 PDT 2010 jm Source of contrast FBbi:00000590 Fri Sep 03 08:53:13 PDT 2010 The source of the variation in the imaged parameter across the field of view. jm The source of the variation in the imaged parameter across the field of view. XX:<new dbxref> differences in chemical composition FBbi:00000591 Fri Sep 03 09:55:12 PDT 2010 jm distribution of epitope FBbi:00000592 Fri Sep 03 09:55:12 PDT 2010 jm form birefringence FBbi:00000593 Fri Sep 03 09:55:12 PDT 2010 jm intrinsic birefringence FBbi:00000594 Fri Sep 03 09:55:12 PDT 2010 jm stress-induced birefringence FBbi:00000595 Fri Sep 03 09:55:12 PDT 2010 jm distribution of a specific nucleic acid sequence FBbi:00000596 Fri Sep 03 09:55:12 PDT 2010 jm distribution of a specific protein FBbi:00000597 Fri Sep 03 09:55:12 PDT 2010 jm differences in adsorption or binding of stain FBbi:00000598 Fri Sep 03 09:55:12 PDT 2010 jm boundaries between regions with different refractive index FBbi:00000599 Fri Sep 03 09:55:12 PDT 2010 jm differences in amount of elastic light scattering FBbi:00000600 Fri Sep 03 09:55:12 PDT 2010 jm differences in deposition of metal shadow FBbi:00000601 Sat Sep 04 11:57:06 PDT 2010 jm differences in intrinsic optical density FBbi:00000602 Sat Sep 04 00:55:54 PDT 2010 jm fluorescence polarization microscopy FBbi:00000603 Sat Sep 04 01:28:20 PDT 2010 jm compartmentalization of stain or label FBbi:00000604 Sat Sep 04 01:31:54 PDT 2010 jm differences in fluorescence lifetime FBbi:00000605 Sat Sep 04 01:35:37 PDT 2010 jm differences in orientation of fluorophore FBbi:00000606 Sat Sep 04 01:36:45 PDT 2010 jm intrinsic mass distribution FBbi:00000607 Sat Sep 04 01:51:14 PDT 2010 jm X-ray fluorescence FBbi:00000608 Sat Sep 04 02:05:02 PDT 2010 jm heat fixed tissue FBbi:00000609 Sat Sep 04 11:49:25 PDT 2010 jm copper salt FBbi:00000610 Sat Sep 04 11:56:02 PDT 2010 jm dispersed cells in vitro FBbi:00000611 Tue Sep 28 04:35:54 PDT 2010 jm Biological Imaging Methods FBbi_root:00000000 1.2 29:09:2010 13:25 Biological Imaging Methods CV OBO-Edit 2.0 This CV covers sample preparation, visualization and imaging methods. autogenerated-by: DAG-Edit version 1.316 corrections and additions to chris@bio.umass.edu date: Mon Feb 17 09:56:49 GMT 2003 editor:Chris Woodcock (The Cell: An Image Library) image saved-by: ma11 version: $Revision: 1.6 $