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Visual system |
The sensory system subserving the sense of vision. |
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Limbic system |
A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. |
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Lip |
One of the two fleshy folds which surround the opening of the mouth. |
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Forelimb |
One of the pair of limbs that are situated anteriorly |
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Interpeduncular nucleus |
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Ventral trigeminal tract |
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Predominantly gray regional part of pretectal region |
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Regional part of adenohypophysis |
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Anterior hypothalamic region |
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Parabigeminal nucleus |
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Interstitial nucleus of Cajal |
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Vestibulocerebellar tract |
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Mesencephalic nucleus of trigeminal nerve |
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Anatomical cavity |
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Rostral sulcus |
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Predominantly gray regional part of adenohypophysis |
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Regional part of superior colliculus |
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Intermediate hypothalamic region |
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Corticotectal tract |
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Posterior middle temporal sulcus |
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Linear nucleus |
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Organ cavity |
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Medullary reticular formation |
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Spur of arcuate sulcus |
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Distal part of hypophysis |
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Predominantly white regional part of superior colliculus |
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Regional part of medullary white matter |
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Temporal operculum |
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Posterior commissure |
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Predominantly white regional part of basal part of pons |
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Subcommissural organ |
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Neuraxis cavity |
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Superior frontal sulcus |
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Tegmentum |
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Midbrain tectum |
Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). |
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Precommissural fornix |
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Predominantly gray regional part of dentate nucleus |
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Central nucleus of inferior colliculus |
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Lateral orbital gyrus |
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Olivary pretectal nucleus |
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Superior precentral sulcus |
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Regional part of organ cavity |
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Superior colliculus |
Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). |
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Regional part of pontine tegmentum |
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Cerebrum |
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Basal part of pons |
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Amiculum of dentate nucleus |
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Transverse temporal sulcus |
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Medial orbital gyrus |
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External nucleus of inferior colliculus |
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Principal pretectal nucleus |
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Orbital frontal cortex |
Component of the frontal lobe, inferior region (Christine Fennema-Notestine). |
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Pontine reticular formation |
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Regional part of inferior olivary complex |
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Regional part of inner ear |
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Posterior orbital gyrus |
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Temporal pole |
Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine). |
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Pericentral nucleus of inferior colliculus |
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Regional part orbital frontal cortex |
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Pericalcarine cortex |
Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine). |
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Regional part of medullary reticular formation |
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Predominantly gray regional part of pontine tegmentum |
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Ear |
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Superficial feature part of cerebral cortex |
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Inferior transverse frontopolar gyrus |
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Brachium of superior colliculus |
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Stria medullaris |
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Predominantly gray regional part of telencephalon |
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Regional part of solitary nucleus |
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Predominantly white regional part of pontine tegmentum |
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Postcentral gyrus |
Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine). |
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Predominantly gray regional part of pontine reticular formation |
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Anterior calcarine sulcus |
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Commissure of superior colliculus |
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Medial transverse frontopolar gyrus |
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Predominantly white regional part of telencephalon |
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Lobe parts of the cerebellar cortex |
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Regional part of pontine reticular formation |
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Regional part of superior olivary complex |
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Anterior parieto-occipital sulcus |
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Regional part of vestibular nuclear complex |
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Central tegmental tract of midbrain |
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Superior transverse frontopolar gyrus |
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Caudal middle frontal gyrus |
Component of the middl frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). |
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Lobular parts of the cerebellar cortex |
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Anterior olfactory nucleus |
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Calcarine sulcus |
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Corpus callosum |
White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM) |
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Nucleus subceruleus |
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Decussation of superior cerebellar peduncle |
Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). |
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Rostral middle frontal gyrus |
Component of the middl frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). |
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Internal arcuate fiber bundle |
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Predominantly white regional part of cerebellar cortex |
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Predominantly gray regional part of frontal lobe |
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Regional part of a lobe of the cerebellum |
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Lateral corticospinal tract |
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Anterior perforated substance |
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Piriform cortex |
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Regional part of anterior nucleus of hypothalamus |
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Central nervous system |
The part of the nervous system consisting of the brain, spinal cord, and meninges. |
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Oral part of spinal trigeminal nucleus |
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Juxtarestiform body |
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Orbital operculum |
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Gyrus rectus |
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Dentatothalamic tract |
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White laminae of cerebellum |
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Vermis |
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Basal nucleus |
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Presubiculum |
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Anterior nucleus of hypothalamus anterior part |
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Pontine raphe nucleus |
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Peripheral nervous system |
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Orbital sulcus |
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Islands of Calleja |
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Regional part of deep cerebellar nuclear complex |
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Telencephalon |
The telencephalon (IPA: /t?l?n's?f?l?n/) is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). |
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Ventral posterior nucleus |
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Insula |
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Anterior lobe of the cerebellum |
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Anterior nucleus of hypothalamus central part |
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Principal sensory nucleus of trigeminal nerve |
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Paracentral sulcus |
Component of the frontal lobe. The rostral boundary of the paracentral lobule is the posterior extent of the superior frontal gyrus whereas the caudal boundary is the rostral extent of the precuneus cortex. The medial and lateral boundaries are the medial aspect of the cortex and the superior frontal gyrus (or pre- and postcentral gyri when visible) respectively (Christine Fennema-Notestine). |
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Regional part of peripheral nervous system |
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Autonomic nervous system |
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Predominantly gray regional part of ventral lateral nucleus |
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Anterior nucleus of hypothalamus posterior part |
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Predominantly gray regional part of deep cerebellar nuclear complex |
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Medial olfactory gyrus |
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Limbic lobe |
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Fasciolar gyrus |
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Posterior superior frontal sulcus |
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Superior salivatory nucleus |
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Superior ramus of arcuate sulcus |
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Sciatic nerve |
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Regional part of autonomic nervous system |
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Emboliform nucleus |
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Occipital lobe |
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Olfactory bulb |
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Paraterminal gyrus |
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Anterior nucleus of hypothalamus dorsal part |
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Ventral nucleus of lateral lemniscus |
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Precentral operculum |
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Superior rostral sulcus |
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Caudal part of ventral lateral nucleus |
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Regional part of eye |
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Fastigial nucleus |
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Regional part of dentate gyrus |
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Parietal lobe |
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Predominantly white regional part of hippocampal formation |
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Spinothalamic tract of midbrain |
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Cochlear nuclear complex |
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Retina |
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Principal sulcus |
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Transverse orbital sulcus |
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Regional part of nervous system |
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Globose nucleus |
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Medial part of ventral lateral nucleus |
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Temporal lobe |
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Superior cerebellar peduncle of midbrain |
Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM). |
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Ventral tegmental decussation |
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Inferior olivary complex |
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Nodulus |
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Enteric nervous system |
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Regional part of brain |
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Regional part of basal part of pons |
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Eye |
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Pars postrema of ventral lateral nucleus |
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Dentate nucleus |
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Trochlear nerve fibers |
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Regional part of cerebral cortex |
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Predominantly gray regional part of epithalamus |
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Vermal parts of the cerebellum |
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Habenulo-interpeduncular tract of diencephalon |
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Regional part of parietal lobe |
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Dentate gyrus |
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Regional part of enteric nervous system |
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Predominantly gray regional part of basal part of pons |
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Regional part of ear |
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Regional part of dentate nucleus |
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Predominantly gray regional part of dentate gyrus |
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Pineal body |
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Vermis of the anterior lobe of the cerebellum |
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Regional part of hippocampus proper |
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Regional part of occipital lobe |
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Tuber cinereum |
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Cochlea |
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Cytoarchitectural fields of hippocampal formation |
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Predominantly gray regional part of lateral hypothalamic region |
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Inferior parietal cortex |
Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). |
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Regional part of cochlear nuclear complex |
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Inner ear |
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CA1 |
A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. |
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Predominantly Gray regional part of parietal lobe |
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Lateral hypothalamic nucleus |
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Midbrain tegmentum |
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Preoptic periventricular nucleus |
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Cerebral peduncle |
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Predominantly white dorsal regional part of medial geniculate body |
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CA3 |
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Regional part of caudate nucleus |
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Lateral tuberal nuclear complex |
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Orbital part of inferior frontal gyrus |
NeuroNames |
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Median preoptic nucleus |
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Regional part of cerebral peduncle |
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Predominantly gray regional part of anterior hypothalamic region |
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Hippocampal molecular layer |
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Head of caudate nucleus |
Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle |
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Predominantly white regional part of cerebral peduncle |
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Capsule of medial geniculate body |
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Tail of caudate nucleus |
Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle |
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Triangular part of inferior frontal gyrus |
Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine). |
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Body of caudate nucleus |
Part of caudate nucleus lying just dorsal to the thalamus |
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Cerebral crus |
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Predominantly white regional part of anterior hypothalamic region |
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Medial part of medial mammillary nucleus |
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Predominantly gray regional part of neostriatum |
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Motor nucleus of trigeminal nerve |
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Orbital gyri complex |
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Regional part of globus pallidus |
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Predominantly gray regional part of ventral nuclear group |
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Anterior nucleus of hypothalamus |
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Regional part of midbrain tegmentum |
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Lateral pulvinar nucleus |
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Predominantly gray regional part of posterior hypothalamic region |
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Head |
Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. |
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Regional part of orbital gyri complex |
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Ventral anterior nucleus |
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Medial pulvinar nucleus |
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Globus pallidus |
Subcortical nucleus, functionally part of the basal ganglig, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. |
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Midbrain reticular formation |
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Predominantly gray regional part of orbital gyri complex |
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Ventral lateral nucleus |
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Cuneocerebellar tract |
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Oral pulvinar nucleus |
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Oculomotor nuclear complex |
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Amygdala |
Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). |
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Cuneate fasciculus of medulla |
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Fronto-orbital gyrus |
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Lateral orbital frontal cortex |
Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine). |
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Decussation of medial lemniscus |
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Predominantly gray medial regional part of thalamus |
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Intermediate orbital gyrus |
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Infundibular stem |
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Medial orbital frontal cortex |
Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the 'inflated' surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine). |
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Dorsal external arcuate fiber bundle |
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Fifth lumbar spinal cord segment |
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Predominantly gray regional part of medial dorsal nucleus |
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Regional part of cerebral ventricular cavity |
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Regional part of median eminence |
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Densocellular part of medial dorsal nucleus |
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Fourth ventricle |
Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. |
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Dorsal longitudinal fasciculus of medulla |
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Transverse frontopolar gyri complex |
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Dorsal nerve root of lumbar spinal cord |
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Superficial feature part of midbrain tectum |
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Cerebral aqueduct |
Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) |
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Magnocellular part of medial dorsal nucleus |
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Lateral ventricle |
Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body |
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Anterior median eminence |
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Regional part of transverse frontopolar gyri complex |
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Ventral nerve root of lumbar spinal cord |
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Dorsolateral fasciculus of medulla |
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Superficial feature part of pons |
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Regional part of central nervous system |
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Regional part of lateral ventricle |
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Tuberomammillary nucleus |
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Predominantly gray regional part of median eminence |
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Predominantly gray regional part of transverse frontopolar gyri complex |
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Glossopharyngeal nerve fiber bundle |
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Sacral spinal cord |
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Paralaminar part of medial dorsal nucleus |
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Abducens nerve root |
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Regional part of Parahippocampal gyrus |
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Anterior horn of lateral ventricle |
Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996) |
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Posterior median eminence |
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Regional part of tuberomammillary nucleus |
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Gracile fasciculus of medulla |
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Parvicellular part of medial dorsal nucleus |
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Regional part of sacral spinal cord |
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Predominantly gray regional part of Parahippocampal gyrus |
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Predominantly gray regional part of metathalamus |
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Body of lateral ventricle |
Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996) |
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Hypoglossal nerve fiber bundle |
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Superficial feature part of intermediate hypothalamic region |
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Tuberomammillary nucleus dorsal part |
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Periamygdaloid area |
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Inferior horn of the lateral ventricle |
The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. |
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Predominantly gray dorsal regional part of thalamus |
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Tuberomammillary nucleus ventral part |
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Posterior parahippocampal gyrus |
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Medial lemniscus of midbrain |
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Posterior horn lateral ventricle |
Part of the lateral ventricle that extends posteriorly into the occipital lobe. |
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Stratum radiatum |
The layer located immediately above the pyramidal cell layer in CA2 and CA1 and suprficial to the stratum lucidum in CA3. Suprapyramidal region in which CA3 to CA3 associational connections and CA3 to CA1 Schaffer collateral connections are located. |
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Medial mammillary nucleus |
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Superior medullary velum |
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Predominantly white dorsal regional part of thalamus |
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Medial longitudinal fasciculus of midbrain |
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Superior frontal gyrus |
Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the 'inflated' surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine). |
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Composite part spanning multiple base regional parts of brain |
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Subiculum |
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Regional part of medial mammillary nucleus |
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Superior olivary complex |
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Predominantly white dorsal regional part of metathalamus |
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Medial pes lemniscus |
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Superior rostral gyrus |
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Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone |
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Septal nuclear complex |
Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). |
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Lateral part of medial mammillary nucleus |
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Septal pellucidum |
A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix. |
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Supracallosal gyrus |
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Regional part of middle frontal gyrus |
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Mesencephalic tract of trigeminal nerve |
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Olfactory nerve |
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Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone |
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Lateral septal nucleus |
Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). |
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Predominantly gray regional part of medial mammillary nucleus |
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Oculomotor nerve fibers |
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Superficial feature part of frontal lobe |
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Suprachiasmatic nucleus |
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Lumbar spinal cord ventral commissure |
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Anterior horizontal limb of lateral sulcus |
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Optic nerve root |
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Flocculus |
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Anterior ascending limb of lateral sulcus |
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Pallidotegmental fasciculus |
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Anterior subcentral sulcus |
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Regional part of paravsuprachiasmatic nucleus |
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Hemispheric parts of the cerebellar cortex |
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Oculomotor nerve root |
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First lumbar spinal cord segment |
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Vestibular nuclear complex |
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Anterior superior frontal sulcus |
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Hemispheric part of the anterior lobe of the cerebellum |
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Third lumbar spinal cord segment |
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Trochlear nerve root |
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Paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone |
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Predominantly white regional part of medullary white matter |
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Diagonal sulcus |
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Second lumbar spinal cord segment |
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Trigeminal nerve root |
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Ventral supraoptic decussation |
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Paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part |
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Regional part of medullary raphe nuclear complex |
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Predominantly gray regional part of anterior nuclear group |
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Superficial feature part of diencephalon |
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Forth lumbar spinal cord segment |
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Hypophysis |
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Paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part |
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Regional part of medulla oblongata |
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Cerebral ventricular cavity |
Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct. |
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Predominantly gray regional part of medullary raphe nuclear complex |
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Anterodorsal nucleus |
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Stratum lacunosum moleculare |
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Superficial feature part of cerebral peduncle |
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Regional part of metencephalon |
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CA2 |
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Nucleus raphe magnus |
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Regional part of inferior parietal cortex |
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Anteromedial nucleus |
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Abducens nucleus |
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Regional part of neostriatum |
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Rhinal sulcus |
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Nucleus raphe obscurus |
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Predominantly gray regional part of superior olivary complex |
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Predominantly Gray regional part of inferior parietal cortex |
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Anteroventral nucleus |
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Caudate nucleus |
Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species. |
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Paraventricular nucleus of the hypothalamus descending division - forniceal part |
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Nucleus raphe pallidus |
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Angular gyrus |
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Predominantly white regional part of superior olivary complex |
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Forth thoracic spinal cord segment |
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Area X |
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Regional part of paraventricular nucleus of hypothalamus magnocellular division |
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Supramarginal gyrus |
Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine). |
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Regional part of superior olive |
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Fifth thoracic spinal cord segment |
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Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part |
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Predominantly gray regional part of superior olive |
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Predominantly gray regional part of occipital lobe |
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Sixth thoracic spinal cord segment |
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Paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part |
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Transverse temporal cortex |
Copmonent of the temporal lobe, lateral aspect. The rostral boundary is the first appearance of the transverse temporal sulcus whereas the caudal boundary is the last slice where the transverse temporal cortex could be identified before its merger into the insular cortex. The lateral fissure and the superior temporal gyrus are the medial and lateral boundaries respectively (Christine Fennema-Notestine). |
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Suprachiasmatic nucleus dorsomedial part |
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Annectant gyrus |
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Seventh thoracic spinal cord segment |
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Suprachiasmatic nucleus ventrolateral part |
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Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part |
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Thoracic spinal cord central canal |
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Cuneus cortex |
Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine). |
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Thoracic spinal cord lateral horn |
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Eighth thoracic spinal cord segment |
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Inferior occipital gyrus |
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Supraoptic crest |
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Anteroventral periventricular nucleus |
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Regional part of neuraxis cavity |
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Regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part |
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Thoracic spinal cord dorsal horn |
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Regional part of oculomotor nuclear complex |
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Regional part of paraventricular nucleus of hypothalamus |
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Paraventricular nucleus of hypothalamus |
. |
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Predominantly gray regional part of midbrain reticular formation |
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Thoracic spinal cord ventral horn |
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Supraoptic nucleus |
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Predominantly gray regional part of oculomotor nuclear complex |
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Paraventricular nucleus of the hypothalamus descending division |
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Medullary white matter |
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Ventral tegmental area |
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Optic chiasm |
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Regional part of thoracic spinal cord dorsal horn |
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Regional part of red nucleus |
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Paraventricular nucleus of the hypothalamus magnocellular division |
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Medullary raphe nuclear complex |
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Ventral tegmental nucleus |
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Occipitotemporal sulcus |
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Regional part of habenula |
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Anterior hypothalamic commissure |
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Predominantly gray regional part of red nucleus |
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Paraventricular nucleus of the hypothalamus parvicellular division |
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Apex of thoracic spinal cord dorsal horn |
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Parieto-occipital sulcus |
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Solitary nucleus |
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Cuneiform nucleus |
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Medial habenular nucleus |
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Substantia gelatinosa of thoracic spinal cord dorsal horn |
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Dorsal supraoptic decussation |
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Predominantly white regional part of red nucleus |
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Regional part of paraventricular nucleus of hypothalamus descending division |
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Preoccipital notch |
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Pedunculopontine tegmental nucleus |
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Lateral habenular nucleus |
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Thoracic spinal cord lateral column |
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Supraopticohypophysial tract |
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Subcuneiform nucleus |
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Thoracic spinal cord dorsal column |
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Predominantly gray regional part of habenula |
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Stratum pyramidale hippocampi |
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Anterior median oculomotor nucleus |
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Precuneus cortex |
Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine). |
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Inferior rostral gyrus |
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Thoracic spinal cord ventral column |
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Predominantly gray regional part of hippocampal formation |
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Superior parietal cortex |
Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine). |
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Middle frontal gyrus |
Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine). |
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First thoracic spinal cord segment |
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Sacral spinal cord dorsal horn |
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Second thoracic spinal cord segment |
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Precentral gyrus |
Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine). |
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Vagus nerve root |
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Sacral spinal cord ventral horn |
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Third thoracic spinal cord segment |
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Sacral spinal cord gray commissure |
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Lateral mammillary nucleus |
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Metathalamus |
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Midline nuclear group |
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Posterior nucleus of hypothalamus |
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Pyramidal tract |
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Predominantly gray regional part of midbrain tegmentum |
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Posterior periventricular nucleus |
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Posterior nuclear complex |
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Cingulate sulcus |
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Dorsal nerve root of sacral spinal cord |
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Nucleus of posterior commissure |
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Reticulospinal tract |
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Predominantly white regional part of midbrain tegmentum |
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Premammillary nucleus |
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Peripeduncular nucleus |
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Circular sulcus of insula |
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Rubrospinal tract |
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Spinal trigeminal tract of medulla |
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Red nucleus |
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Supramammillary nucleus |
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Collateral sulcus |
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Rostral interstitial nucleus of medial longitudinal fasciculus |
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Hilus of dentate gyrus |
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Solitary tract |
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Spino-olivary tract |
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Regional part of midbrain reticular formation |
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Mammillary peduncle |
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Lateral sulcus |
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Trochlear nucleus |
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Cerebellum |
. |
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Paleodentate of dentate nucleus |
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Sacral spinal cord gray matter |
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Mammillary princeps fasciculus |
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Limen of insula |
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Cerebral cortex |
The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon and folds into gyri (adapted from MSH by Christine Fennema-Notestine). |
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Regional part of sacral spinal cord gray matter |
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Regional part of spinal cord |
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Mammillotegmental fasciculus |
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Cervical spinal cord |
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Sacral spinal cord white matter |
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Medial medullary lamina |
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Fimbria of hippocampus |
Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26). |
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Diencephalon |
. |
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Fasciculus retroflexus |
White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone) |
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Regional part of cervical spinal cord |
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Regional part of sacral spinal cord white matter |
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Predominantly gray regional part of basal nuclear complex |
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Entorhinal cortex |
Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK) |
|
Forebrain |
The part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube and consisting of the Diencephalon and Telencephalon. |
|
Alveus |
Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26). |
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Cervical spinal cord central canal |
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Segment part of sacral spinal cord |
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Facial nerve root |
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Sacral spinal cord dorsal column |
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Claustral amygdaloid area |
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Pontine nuclear complex |
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Regional part of thalamus |
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Nerve root part of sacral spinal cord |
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Vestibulocochlear nerve root |
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Sacral spinal cord ventral column |
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Cervical spinal cord gray matter |
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Claustrum |
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Longitudinal pontine fibers |
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Predominantly gray anterior regional part of thalamus |
Regional part of thalamus lying between the "arms" of the internal medullary lamina in the rostral part of the thalamus which contains the anterior nuclear group (MM: 2006-10-26) |
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Regional part of cervical spinal cord gray matter |
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Superficial feature part of medulla oblongata |
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Sacral spinal cord lateral horn |
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Sacral spinal cord ventral commissure |
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Middle cerebellar peduncle |
Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM). |
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Intralaminar nuclear group |
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Cervical spinal cord white matter |
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First sacral spinal cord segment |
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Glossopharyngeal nerve root |
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Superior temporal sulcus |
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Transverse pontine fibers |
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Predominantly white regional part of posterior hypothalamic region |
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Lateral nuclear group |
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Superficial feature part of temporal lobe |
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Second sacral spinal cord segment |
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Lateral inferior limiting sulcus |
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Isthmus of cingulate gyrus |
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Superficial feature part of posterior hypothalamic region |
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Medial dorsal nucleus |
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Third sacral spinal cord segment |
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Predominantly gray regional part of globus pallidus |
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Posterior cingulate gyrus |
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Thoracic spinal cord gray commissure |
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Forth sacral spinal cord segment |
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Predominantly white regional part of septum pellucidum |
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Predominantly gray regional part of cingulate gyrus |
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Diagonal band |
A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala. |
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Cervical spinal cord ventral commissure |
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Fifth sacral spinal cord segment |
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Lamina of septum pellucidum |
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Globus pallidus internal segment |
The more medial segment of the globus pallidus. |
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Thoracic spinal cord ventral commissure |
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Anterior commisure |
. |
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Dorsomedial nucleus of hypothalamus |
. |
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Lateral olfactory stria |
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Basal forebrain |
A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert. |
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Hilum of dentate nucleus |
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Cerebellar white matter |
Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles. |
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Ventral amygdalofugal projection |
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Intermediate periventricular nucleus |
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Brainstem |
. |
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Cerebellar cortex |
. |
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Neodentate part of dentate nucleus |
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Deep cerebellar nuclear complex |
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Retrochiasmatic area |
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Medial lemniscus of medulla |
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Regional part of cerebellar cortex |
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Ventromedial nucleus of hypothalamus |
. |
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Regional part of cerebral white matter |
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Medial longitudinal fasciculus of medulla |
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Cerebellar hemisphere |
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Regional part of hypophysis |
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Inferior temporal gyrus |
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine). |
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Regional part of transverse temporal cortex |
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Olivocerebellar tract |
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Accessory nerve root |
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Adenohypophysis |
. |
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Anterior transverse termporal area 41 |
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Predominantly gray regional part of lateral geniculate body |
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Ninth thoracic spinal cord segment |
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Posterior spinocerebellar tract |
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Neurohypophysis |
. |
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Sacral spinal cord lateral column |
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Hypoglossal nerve root |
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Posterior transverse termporal area 42 |
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Predorsal bundle |
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Tenth thoracic spinal cord segment |
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Predominantly gray regional part of medial geniculate body |
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Superficial feature part of hypophysis |
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Pyramidal decussation |
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Dorsal nucleus of lateral geniculate body |
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Eleventh thoracic spinal cord segment |
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Ventral nucleus of lateral geniculate body |
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Twelfth thoracic spinal cord segment |
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Regional part of cingulate gyrus |
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Anterodorsal nucleus of medial geniculate body |
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Dorsal nerve root of thoracic spinal cord |
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Regional part of lumbar spinal cord |
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Anterior cingulate gyrus |
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Lumbar spinal cord central canal |
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Regional part of outer ear |
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Ventral nerve root of thoracic spinal cord |
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Regional part of epithalamus |
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Dorsal nucleus of medial geniculate body |
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Habenular commissure |
|
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Globus pallidus external segment |
The more lateral of the two segments of the globus pallidus, abutting the putamen |
|
Habenula |
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Magnocellular nucleus of medial geniculate body |
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Nerve root part of lumbar spinal cord |
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Cervical spinal cord gray commissure |
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Nerve part of peripheral nervous system |
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Simian fossa |
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Predominantly white regional part of globus pallidus |
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Ventral corticospinal tract |
|
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Inferior frontal sulcus |
|
|
Predominantly white regional part of epithalamus |
|
|
Internal medullary lamina of thalamus |
Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26) |
|
Posterodorsal nucleus of medial geniculate body |
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Cranial nerve |
. |
|
Lumbar spinal cord gray matter |
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Regional part of temporal lobe |
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Accessory medullary lamina |
|
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Inferior precentral sulcus |
|
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Ventral external arcuate fiber bundle |
|
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Basal nuclear complex |
The deep nuclei of telencephalic origin found in the basal region of the forebrain |
|
Predominantly gray regional part of intermediate hypothalamic region |
|
|
Regional part of lumbar spinal cord gray matter |
|
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Olfactory nerve root |
|
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Predominantly gray regional part of temporal lobe |
|
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Lateral medullary lamina |
|
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Inferior ramus of arcuate sulcus |
|
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Vestibulocochlear nerve fiber bundle |
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Lateral orbital sulcus |
|
|
Arcuate nucleus of hypothalamus |
. |
|
Lumbar spinal cord white matter |
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|
Optic nerve |
. |
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Fusiform gyrus |
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Inferior rostral sulcus |
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Vestibulospinal tract |
|
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Medial orbital sulcus |
|
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Oculomotor nerve |
. |
|
Regional part of lumbar spinal cord white matter |
|
|
Superior temporal gyrus |
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine). |
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Nerve tract |
|
|
Middle frontal sulcus |
|
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Posterior hypothalamic region |
|
|
Segment part of lumbar spinal cord |
|
|
Middle temporal gyrus |
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine). |
|
Trochlear nerve |
. |
|
Olfactory sulcus |
|
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Predominantly gray regional part of hypothalamus |
|
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Anterior transverse temporal gyrus |
|
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Internal capsule |
. |
|
Cervical spinal cord ventral column |
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Posterior transverse temporal gyrus |
|
|
Lateral geniculate body |
|
|
Olfactory tract |
White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone) |
|
Predominantly gray regional part of ventral posterolateral nucleus |
|
|
Cervical spinal cord lateral horn |
|
|
Olivocochlear bundle |
|
|
Midbrain |
|
|
Medial septal nucleus |
Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981). |
|
Ventral nuclear group |
Mostly gray regional part of the lateral thalamic region, consisting of a large group of nuclei lying between the internal medullary lamina and the internal capsule. It includes the ventral anterior, ventral lateral, and ventral posterior nuclei (MM: 2006-10-26) |
|
Medial geniculate body |
|
|
Predominantly gray regional part of ventral posterior nucleus |
|
|
Striatum |
|
|
Cervical spinal cord dorsal horn |
|
|
Ventral pallidum |
Part of the globus pallidus, consistingo of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). |
|
Lateral superior olivary nucleus |
|
|
Midbrain raphe nuclei |
Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe. |
|
Regional part of forebrain |
|
|
Predominantly white regional part of diencephalon |
|
|
Predominantly gray regional part of thalamus |
|
|
Cervical spinal cord ventral horn |
|
|
Caudal part of ventral posterolateral nucleus |
|
|
Medial superior olivary nucleus |
|
|
Central tegmental tract of pons |
|
|
Optic tract |
Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM). |
|
Regional part of diencephalon |
|
|
Predominantly white regional part of thalamus |
|
|
Regional part of lateral hypothalamic region |
|
|
Segment part of cervical spinal cord |
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|
Abducens nerve fibers |
|
|
Decussation of trochlear nerve |
|
|
Inferior cerebellar peduncle |
Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM). |
|
Anterior nuclear group |
Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26) |
|
Regional part of septum |
|
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First cervical spinal cord segment |
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Middle ear |
. |
|
Eighth cervical spinal cord segment |
|
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Regional part of posterior hypothalamic region |
|
|
Dorsal acoustic stria |
|
|
Regional part of telencephalon |
|
|
Predominantly gray ventral regional part of thalamus |
|
|
Rostral migratory stream |
Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb. |
|
Regional part of cervical spinal cord dorsal horn |
|
|
Lumbar spinal cord |
|
|
Outer ear |
. |
|
Preoptic area |
. |
|
Dorsal longitudinal fasciculus of pons |
|
|
Medial longitudinal fasciculus of pons |
|
|
Spinal cord |
Part of the central nervous system which is lodged in the vertebral canal; it is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate; it is enclosed in three protective membranes, the meninges. |
|
Epithalamus |
|
|
Superior cerebellar peduncle |
A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM). |
|
Predominantly gray posterior regional part of thalamus |
|
|
Regional part of middle ear |
|
|
Apex of cervical spinal cord dorsal horn |
|
|
Regional part of Preoptic area |
|
|
Frontal pole |
Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine). |
|
Motor root of trigeminal nerve |
|
|
Dorsal trigeminal tract |
|
|
Spinothalamic tract of pons |
|
|
Thalamic reticular nucleus |
|
|
Lateral preoptic nucleus |
|
|
Substantia gelatinosa of cervical spinal cord dorsal horn |
|
|
Fronto-orbital sulcus |
|
|
Spinal trigeminal tract of pons |
|
|
Superior cerebellar peduncle of pons |
|
|
Stratum zonale of thalamus |
|
|
Left parietal lobe |
|
|
Right parietal lobe |
|
|
Brodmann partition scheme region |
. |
|
Brodmann (1909) area 1 |
. |
|
Brodmann (1909) area 2 |
. |
|
Brodmann (1909) area 3 |
. |
|
Brodmann (1909) area 4 |
. |
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Brodmann (1909) area 5 |
. |
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Brodmann (1909) area 6 |
. |
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Brodmann (1909) area 7 |
. |
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Brodmann (1909) area 8 |
. |
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Brodmann (1909) area 9 |
. |
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Brodmann (1909) area 10 |
. |
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Brodmann (1909) area 11 |
. |
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Brodmann (1909) area 12 |
. |
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Brodmann (1909) area 13 |
. |
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Brodmann (1909) area 14 |
. |
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Brodmann (1909) area 15 |
. |
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Brodmann (1909) area 16 |
. |
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Brodmann (1909) area 17 |
. |
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Brodmann (1909) area 18 |
. |
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Brodmann (1909) area 19 |
. |
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Brodmann (1909) area 20 |
. |
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Brodmann (1909) area 21 |
. |
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Brodmann (1909) area 22 |
. |
|
Brodmann (1909) area 23 |
. |
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Brodmann (1909) area 24 |
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Brodmann (1909) area 25 |
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Brodmann (1909) area 26 |
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Brodmann (1909) area 27 |
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Brodmann (1909) area 28 |
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Brodmann (1909) area 32 |
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Brodmann (1909) area 43 |
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Brodmann (1909) area 8a |
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Brodmann (1909) area 29 |
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Brodmann (1909) area 30 |
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Brodmann (1909) area 31 |
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Brodmann (1909) area 33 |
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Brodmann (1909) area 34 |
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Brodmann (1909) area 35 |
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Brodmann (1909) area 36 |
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Brodmann (1909) area 37 |
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Brodmann (1909) area 38 |
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Brodmann (1909) area 39 |
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Brodmann (1909) area 40 |
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Brodmann (1909) area 41 |
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Brodmann (1909) area 42 |
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Brodmann (1909) area 44 |
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Brodmann (1909) area 45 |
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Brodmann (1909) area 46 |
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Brodmann (1909) area 47 |
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Left limbic lobe |
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Right limbic lobe |
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Left occipital lobe |
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Right occipital lobe |
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Left temporal lobe |
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Right temporal lobe |
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Right frontal lobe |
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Left frontal lobe |
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Sub-lobar region |
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Left sub-lobar region |
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Right sub-lobar region |
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Brodmann (1909) area 48 |
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Brodmann (1909) area 52 |
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Regional part of retina |
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Regional part of cochlea |
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Left cerebral hemisphere |
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Hemisphere parts of cerebral cortex |
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Right cerebral hemisphere |
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Cerebral Spinal Fluid |
The fluid that is contained within the brain ventricles, the subarachnoid space and the central canal of the spinal cord. (NCI)nnTransudate contained in the subarachnoid space. (UWDA)nn clear colorless liquid secreted by the choroid plexus of the lateral, third, and fourth ventricles, and contained within the ventricular system of the brain and spinal cord and within the subarachnoid space. (CSP) |
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Dorsomedial subnucleus of solitary tract |
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Circuit part of central nervous system |
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Principal neuronal circuit |
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Intrinsic neuronal circuit |
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Sympathetic nervous system |
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Parasympathetic nervous system |
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Vestibular organ |
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Basilar membrane |
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Basis modioli |
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Apex of cochlea |
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Spiral ligament of cochlea |
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Stria Vascularis |
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Spiral organ of Corti |
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Regional part of basilar membrane |
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Zona arcuata of basilar membrane of cochlea |
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Zona arcuata of basilar membrane of cochlea |
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Regional part of spiral organ of Corti |
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Tectorial membrane of spiral organ of cochlea |
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Spiral prominence of cochlea |
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Macula |
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Regional part of macula |
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Macula lutea proper |
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Fovea |
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Clivus of fovea centralis |
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Regional part of fovea |
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Cytoarchitectural part of cerebral cortex |
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Neocortex |
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Ganglion part of peripheral nervous system |
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Vestibular ganglion |
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Regional part of vestibular ganglion |
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Superior part of vestibular ganglion |
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Inferior part of vestibular ganglion |
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Cochlear canal |
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Regional part of cochlear canal |
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Apex of the cochlear canal |
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Base of the cochlear canal |
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Cupula of the cochlear canal |
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Vestibular fissure of the cochlear canal |
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Terminal part of the cochlear canal |
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Duct part of cochlear canal |
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Tympanic canal |
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Cochlea duct |
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Vestibular canal |
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Auditory ganglion |
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Regional part of cochlear duct |
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Ventral cochlear nucleus |
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Predominantly gray part of cochlear nuclear complex |
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Dorsal cochlear nucleus |
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Regional part of ventral cochlear nucleus |
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Predominantly gray part of ventral cochlear nucleus |
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Anteroventral cochlear nucleus |
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Posteroventral cochlear nucleus |
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Regional part of trapezoid nuclear complex |
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Dorsal nucleus of trapezoid body |
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Ventral nucleus of trapezoid body |
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Medial nucleus of trapezoid body |
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Dorsal root ganglion |
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Cranial ganglion part of peripheral nervous system |
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Spinal ganglion part of peripheral nervous system |
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Cervical dorsal root ganglion |
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Thoracic dorsal root ganglion |
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Lumbar dorsal root ganglion |
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Sacral dorsal root ganglion |
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First cervical dorsal root ganglion |
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Second cervical dorsal root ganglion |
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Third cervical dorsal root ganglion |
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Fourth cervical dorsal root ganglion |
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Fifth cervical dorsal root ganglion |
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Sixth cervical dorsal root ganglion |
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Seventh cervical dorsal root ganglion |
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Eighth cervical dorsal root ganglion |
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First thoracic dorsal root ganglion |
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Second thoracic dorsal root ganglion |
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Third thoracic dorsal root ganglion |
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Forth thoracic dorsal root ganglion |
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Fifth thoracic dorsal root ganglion |
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Sixth thoracic dorsal root ganglion |
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Seventh thoracic dorsal root ganglion |
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Eighth thoracic dorsal root ganglion |
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Ninth thoracic dorsal root ganglion |
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Tenth thoracic dorsal root ganglion |
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Eleventh thoracic dorsal root ganglion |
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Twelfth thoracic dorsal root ganglion |
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Second lumbar dorsal root ganglion |
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First lumbar dorsal root ganglion |
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Third lumbar dorsal root ganglion |
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Forth lumbar dorsal root ganglion |
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Fifth lumbar dorsal root ganglion |
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First sacral dorsal root ganglion |
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Second sacral dorsal root ganglion |
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Third sacral dorsal root ganglion |
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Forth sacral dorsal root ganglion |
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Fifth sacral dorsal root ganglion |
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Predominantly gray part of medulla oblongata |
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Accessory cuneate nucleus |
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Arcuate nucleus of medulla |
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Area postrema |
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Caudal part of spinal trigeminal nucleus |
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Central gray substance of medulla |
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Commissural nucleus of vagus nerve |
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Cuneate nucleus |
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Diffuse reticular nucleus |
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Dorsal motor nucleus of vagus nerve |
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Gracile nucleus |
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Hypoglossal nucleus |
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Inferior salivatory nucleus |
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Interpolar part of spinal trigeminal nucleus |
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Lateral pericuneate nucleus |
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Medial pericuneate nucleus |
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Medullary anterior horn |
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Nucleus ambiguus |
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Nucleus intercalatus |
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Nucleus prepositus |
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Parasolitary nucleus |
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Nucleus intercalatus |
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Peritrigeminal nucleus |
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Pontobulbar nucleus |
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Sublingual nucleus |
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Supraspinal nucleus |
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Dorsolateral subnucleus of solitary tract |
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Predominantly gray part of solitary nucleus |
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Medial subnucleus of solitary tract |
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Parvicellular subnucleus of solitary tract |
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Ventrolateral subnucleus of solitary tract |
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Axial regional part of spinal cord |
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Spinal cord lateral horn |
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Spinal cord dorsal horn |
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Spinal cord ventral horn |
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Spinal cord gray commissure |
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Apex of spinal cord dorsal horn |
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Regional part of spinal cord dorsal horn |
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Substantia gelatinosa of spinal cord dorsal horn |
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Regional part of spinal cord gray commissure |
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Spinal cord anterior gray commissure |
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Spinal cord posterior gray commissure |
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Regional part of amygdala |
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Basolateral amygdaloid nuclear complex |
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Corticomedial nuclear complex |
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Predominantly gray regional part of amygdala |
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Central amygdaloid nucleus |
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Intercalated amygdaloid nuclei |
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Predominantly gray part of basolateral nuclear complex |
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Regional part of basolateral nuclear complex |
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Accessory basal amygdaloid nucleus |
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Lateral amygdaloid nucleus |
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Regional part of lateral amygdaloid nucleus |
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Lateral amygdaloid nucleus, dorsolateral part |
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Lateral amygdaloid nucleus, ventrolateral part |
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Lateral amygdaloid nucleus, ventromedial part |
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Basal amygdaloid nucleus |
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Regional part of basal amygdaloid nucleus |
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Predominantly gray part of basal amygdaloid nucleus |
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Lateral part of basal amygdaloid nucleus |
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Medial part of basal amygdaloid nucleus |
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Regional part of corticomedial nuclear complex |
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Anterior amygdaloid area |
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Predominantly gray part of corticomedial nuclear complex |
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Cortical amygdaloid nucleus |
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Medial amygdaloid nucleus |
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Nucleus of lateral olfactory tract |
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Olfactory epithelium |
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Regional part of entorhinal cortex |
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Olfactory entorhinal cortex |
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Primary olfactory cortex |
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Olfactory cortex |
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Regional part of olfactory cortex |
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Secondary olfactory cortex |
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Frontomarginal sulcus |
The term frontomarginal sulcus (H) refers to a superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN) |
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Telodiencephalic fissure |
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Cistern of lamina terminalis |
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Chiasmatic cistern |
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Hippocampal sulcus |
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Superficial feature part of forebrain |
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Intermediate frontal sulcus |
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Regional part of posterior superior frontal sulcus |
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Medial precentral sulcus |
The term medial precentral sulcus (H) refers to a superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN) |
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Transverse parietal sulcus |
The term transverse parietal sulcus (H) refers to a sulcus in the human PARIETAL LOBE that branches dorsally from the intraparietal sulcus (Savel'ev-96). (NN) |
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Inferior Parietal Sulcus |
The term superior parietal sulcus (H) refers to a superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN) |
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Superior parietal sulcus |
The term superior parietal sulcus (H) refers to a superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN) |
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Angular sulcus |
The term angular sulcus (H) refers to a superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN) |
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Transverse occipital sulcus |
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Superior calcarine sulcus |
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Posterior calcarine sulcus |
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Occipital pole |
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Lunate sulcus |
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Lateral occipital sulcus |
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Intralingual sulcus |
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Inferior occipital sulcus |
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Inferior calcarine sulcus |
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Ectocalcarine sulcus |
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Anterior occipital sulcus |
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Superficial feature part of occipital lobe |
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Superior postcentral sulcus |
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Subparietal sulcus |
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Posterior subcentral sulcus |
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Posterior ascending limb of lateral sulcus |
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Parietal operculum |
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Marginal sulcus |
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Intraparietal sulcus |
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Inferior postcentral sulcus |
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Postcentral sulcus |
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Superficial feature part of parietal cortex |
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Central sulcus |
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Regional part of inferior colliculus |
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Lateral hypothalamic area |
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Medial parabrachial nucleus |
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Anterior parolfactory sulcus |
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Callosal sulcus |
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Longitudinal fissure |
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Olfactory trigone |
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Posterior parolfactory sulcus |
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Terminal nerve |
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Terminal nerve root |
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Regional part of longitudinal fissure |
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Inferior Sagittal Sulcus |
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Superior Sagittal Sulcus |
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Regional part of calcarine sulcus |
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Calcarine Sulcus (dorsal) |
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Calcarine Sulcus (ventral) |
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Hadjikhani et al. (1998) visuotopic partition scheme region |
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Hadjikhani et al. (1998) Visuotopic area V1d |
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Hadjikhani et al. (1998) Visuotopic area V1v |
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Hadjikhani et al. (1998) Visuotopic area V2d |
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Hadjikhani et al. (1998) Visuotopic area V2v |
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Hadjikhani et al. (1998) Visuotopic area V3 |
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Hadjikhani et al. (1998) Visuotopic area V3A |
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Hadjikhani et al. (1998) Visuotopic area VP |
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Hadjikhani et al. (1998) Visuotopic area V4v |
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Hadjikhani et al. (1998) Visuotopic area V8 |
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Tootell and Hadjikhani (2001) LOC/LOP complex |
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Press, Brewer, Dougherty, Wade and Wandell (2001) Visuotopic area V7 |
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Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region |
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Cytoarchitectural part of occipital lobe |
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Cytoarchitectural part of frontal lobe |
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Ongur, Price, and Ferry (2003) area 10p |
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Ongur, Price, and Ferry (2003) area 10r |
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Ongur, Price, and Ferry (2003) area 10o |
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Ongur, Price, and Ferry (2003) area 10m |
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Ongur, Price, and Ferry (2003) area 11m |
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Ongur, Price, and Ferry (2003) area 47s |
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Ongur, Price, and Ferry (2003) area 13b |
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Ongur, Price, and Ferry (2003) area 13a |
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Ongur, Price, and Ferry (2003) area 14r |
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Ongur, Price, and Ferry (2003) area 14c |
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Ongur, Price, and Ferry (2003) area 24 |
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Ongur, Price, and Ferry (2003) area 25 |
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Ongur, Price, and Ferry (2003) area 32 |
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Ongur, Price, and Ferry (2003) area G |
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Ongur, Price, and Ferry (2003) area PrCO |
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Ongur, Price, and Ferry (2003) area 11l |
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Ongur, Price, and Ferry (2003) area 13m |
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Ongur, Price, and Ferry (2003) area 13l |
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Ongur, Price, and Ferry (2003) area 47l |
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Ongur, Price, and Ferry (2003) area 47m |
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Ongur, Price, and Ferry (2003) area 47r |
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Ongur, Price, and Ferry (2003) area Iam |
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Ongur, Price, and Ferry (2003) area Ial |
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Ongur, Price, and Ferry (2003) area Iai |
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Ongur, Price, and Ferry (2003) area 9 |
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Ongur, Price, and Ferry (2003) area 10l |
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Ongur, Price, and Ferry (2003) area PrCo |
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Ongur, Price, and Ferry (2003) area Iapm |
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Ongur, Price, and Ferry (2003) area AON |
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Trigeminal nuclear complex |
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Trigeminal tract |
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Regional part of tongue |
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Gustatory epithelium |
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Regional part of gustatory epithelium |
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Taste bud |
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Lingual papilla |
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Conical papilla |
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Filiform papilla |
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Foliate papilla |
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Fungiform papilla |
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Circumvallate papilla |
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Nigrostriatal tract |
The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83). |
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Stratum lucidum |
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Regional part of stratum pyramidale hippocampi |
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CA1 stratum pyramidale hippocampi |
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CA2 stratum pyramidale hippocampi |
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CA3 stratum pyramidale hippocampi |
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Stratum oriens |
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Regional part of stratum oriens |
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CA2 stratum oriens |
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CA1 stratum oriens |
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CA3 stratum oriens |
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Regional part of stratum radiatum |
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CA1 stratum radiatum |
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CA2 stratum radiatum |
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CA3 stratum radiatum |
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Regional part of stratum lacunosum moleculare |
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CA1 stratum lacunosum moleculare |
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CA2 stratum lacunosum moleculare |
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CA3 stratum lacunosum moleculare |
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Cytoarchitectural part of dentate gyrus |
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Dentate gyrus molecular layer |
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Dentate gyrus granule cell layer |
Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick. |
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Predominantly gray regional part of Preoptic area |
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Tectopontine tract |
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Regional part of basal nuclear complex |
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Pretectal region |
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Dorsal septal nucleus |
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Fornix |
is a C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM). |
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Medial preoptic nucleus |
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Trapezoid body |
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Subthalamus |
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Predominantly gray regional part of ventral anterior nucleus |
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Cerebral white matter |
White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine). |
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Nucleus of anterior commissure |
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Ventral oculomotor nucleus |
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Third ventricle |
Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone) |
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Hippocampal formation |
A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampal formation is often used synonymously with hippocampus which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. |
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Magnocellular part of ventral anterior nucleus |
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Regional part of spinal cord central canal |
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Predominantly gray regional part of inferior colliculus |
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Nucleus of diagonal band |
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Magnocellular part of red nucleus |
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Hippocampus |
A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. |
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Parvicellular part of ventral anterior nucleus |
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Regional part of cervical spinal cord white matter |
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Nucleus of stria terminalis |
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Parvocellular part of red nucleus |
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Nucleus accumbens |
A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the caudate and putamen, the nucleus accumbens forms the striatum. |
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Cervical spinal cord lateral column |
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Septofimbrial nucleus |
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Anterior column of fornix |
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Capsule of red nucleus |
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Pons |
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Hypothalamus |
Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle. |
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Lateral occipital cortex |
Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine). |
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Cervical spinal cord dorsal column |
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Ventral posterolateral nucleus |
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Predominantly white regional part of fornix |
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Body of fornix |
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Lingual gyrus |
Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine). |
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Spinothalamic tract of medulla |
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Regional part of anterior commissure |
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Ventral posteromedial nucleus |
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Third cervical spinal cord segment |
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Trapezoid nuclear complex |
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Commissure of fornix |
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Occipital gyrus |
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Regional part of cerebellum |
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Thalamic Fiber Tracts |
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Tectobulbar tract |
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Frontal operculum |
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Second cervical spinal cord segment |
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Forth cervical spinal cord segment |
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Posterior column of fornix |
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Ventral nerve root of sacral spinal cord |
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Regional part of hippocampal formation |
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Superior occipital gyrus |
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Tectospinal tract |
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Fifth cervical spinal cord segment |
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Regional part of anterior hypothalamic region |
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Regional part of midbrain |
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Paraventricular nucleus of thalamus |
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Vagal nerve fiber bundle |
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Sixth cervical spinal cord segment |
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Regional part of intermediate hypothalamic region |
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Intermediate acoustic stria |
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Reuniens nucleus |
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Regional part of pons |
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Predominantly gray part of posterior nuclear complex |
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Seventh cervical spinal cord segment |
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Lateral lemniscus |
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Regional part of substantia nigra |
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Dorsal hypothalamic area |
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Rhomboidal nucleus |
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Granular layer of cerebellar cortex |
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Caudal central oculomotor nucleus |
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Medial lemniscus of pons |
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Predominantly gray regional part of substantia nigra |
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Subfascicular nucleus |
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Regional part of granular layer of cerebellar cortex |
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Predominantly white regional part of hypothalamus |
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Central oculomotor nucleus |
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Substantia nigra |
Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM). |
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Inner granular layer of cerebellar cortex |
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Regional part of lumbar spinal cord dorsal horn |
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Caudal pontine reticular nucleus |
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Dorsal oculomotor nucleus |
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Rostral intralaminar nuclei |
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Regional part of midbrain tectum |
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Brain |
The part of the central nervous system contained within the cranium, comprising the prosencephalon, mesencephalon, and rhombencephalon. It is derived from the anterior part of the embryonic neural tube. |
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Outer granular layer of cerebellar cortex |
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Cingulate gyrus |
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Central gray substance of pons |
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Inferior temporal sulcus |
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Vagus nerve |
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Lumbar spinal cord gray commissure |
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Intermediate oculomotor nucleus |
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Periolivary nucleus |
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Centromedian nucleus |
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Inferior colliculus |
Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). |
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Parahippocampal gyrus |
Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine). |
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Predominantly white regional part of tectum |
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Putamen |
Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion. |
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Molecular layer of cerebellar cortex |
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Apex of lumbar spinal cord dorsal horn |
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Accessory nerve |
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Medial oculomotor nucleus |
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Preolivary nucleus |
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Predominantly gray regional part of tectum |
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Triangular septal nucleus |
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Oral part of ventral lateral nucleus |
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Purkinje cell layer of cerebellar cortex |
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Substantia gelatinosa of lumbar spinal cord dorsal horn |
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Hypoglossal nerve |
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Regional part of inferior frontal gyrus |
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Parvocellular oculomotor nucleus |
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Opercular part of inferior frontal gyrus |
Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus. |
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Pulvinar |
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Regional part of septal nuclear complex |
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Basal ganglia |
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Facial nerve |
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Lumbar spinal cord lateral column |
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Predominantly gray regional part of inferior frontal gyrus |
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Inferior pulvinar nucleus |
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Predominantly gray regional part of limbic lobe |
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Predominantly gray regional part of septal nuclear complex |
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Superficial feature part of telencephalon |
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Lumbar spinal cord dorsal column |
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Lateral posterior nucleus |
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Nerve root part of thoracic spinal cord |
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Lateral dorsal nucleus |
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Predominantly white regional part of anterior commissure |
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Lumbar spinal cord ventral column |
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Predominantly gray regional part of pulvinar |
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Regional part of fornix |
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Nervous system |
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Ventral nucleus of medial geniculate body |
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Anterior spinocerebellar tract |
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Predominantly gray midline regional part of thalamus |
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Predominantly gray part of Intralaminar nuclear group |
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Predominantly gray regional part of midline nuclear group |
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Mammillothalamic tract of hypothalamus |
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Regional part of superior temporal sulcus |
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Supramammillary commissure |
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Paratenial nucleus |
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Inferior central nucleus |
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Banks of superior temporal sulcus |
Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine). |
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Nucleus of pretectal area |
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Mammillary body |
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Substantia nigra pars lateralis |
Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). |
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Nucleus of optic tract |
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Trigeminal nerve |
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Nucleus of medial eminence |
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Fasciculus |
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Inferior frontal gyrus |
Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine). |
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Oral pontine reticular nucleus |
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Abducens nerve |
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Lumbar spinal cord lateral horn |
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Cytoskeletal system |
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Cytoarchitectural part of the cerebellar cortex |
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Lemniscus |
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Reticulotegmental nucleus |
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Lumbar spinal cord dorsal horn |
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Regional part of thoracic spinal cord white matter |
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Medial lemniscus |
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Superior central nucleus |
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Vestibulocochlear nerve |
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Lumbar spinal cord ventral horn |
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Segment part of thoracic spinal cord |
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Dorsal longitudinal fasciculus of midbrain |
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Dorsal nucleus of lateral lemniscus |
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Habenulo-interpeduncular tract of midbrain |
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Nucleus of Darkschewitsch |
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Lateral parabrachial nucleus |
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Dorsal longitudinal fasciculus of hypothalamus |
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Glossopharyngeal nerve |
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Superior olive |
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Dorsal tegmental decussation |
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Lateral pes lemniscus |
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Facial motor nucleus |
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Flocculonodular lobe |
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Locus ceruleus |
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Intermediate part of hypophysis |
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Alar central lobule |
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Medial forebrain bundle |
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posterior lobe of the cerebellum |
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Tuberal part of hypophysis |
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Anterior quadrangular lobule |
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Postcommissural fornix |
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Substantia innominata |
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Accessory nerve fiber bundle |
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Parvicellular part of ventral posteromedial nucleus |
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Oral part of ventral posterolateral nucleus |
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Subcallosal area |
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Central lobule |
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Regional part of neurohypophysis |
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Lobe parts of cerebral cortex |
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Pontine tegmentum |
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Predominantly gray regional part of ventral posteromedial nucleus |
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Median eminence |
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Culmen |
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Principal part of ventral posteromedial nucleus |
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Frontal lobe |
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Brachium of inferior colliculus |
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Regional part of cingulate cortex |
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Limitans nucleus |
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Lingula |
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Predominantly gray regional part of neurohypophysis |
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Cingulate cortex |
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Commissure of inferior colliculus |
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Anterior cingulate cortex |
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Stria terminalis |
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Posterior nucleus of thalamus |
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Gross anatomical part of cerebral cortex |
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Pars nervosa of hypophysis |
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Hindbrain |
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Isthmus of cingulate cortex |
Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine). |
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Subicular complex |
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Submedial nucleus |
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Regional part of limbic lobe |
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Predominantly gray part of rostral intralaminar nuclei |
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Regional part of hindbrain |
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Posterior cingulate cortex |
Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine). |
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Parafascicular nucleus |
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Suprageniculate nucleus |
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Thalamus |
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Nerve root part of cervical spinal cord |
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Central dorsal nucleus |
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Medulla oblongata |
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Ventral nerve root of cervical spinal cord |
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Regional part of cerebellar white matter |
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Regional part of Anterior cingulate cortex |
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Central lateral nucleus |
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Predominantly gray intralaminal regional part of thalamus |
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Septum |
Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996). |
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Dorsal nerve root of cervical spinal cord |
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Metencephalon |
Anterior part of the hindbrain ventral to the cerebellum. |
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Thoracic spinal cord |
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Caudal anterior cingulate cortex |
Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine). |
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Substantia nigra pars reticulata |
Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). |
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Cerebellar penducular complex |
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Central medial nucleus |
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Regional part of thoracic spinal cord |
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Central gray substance of midbrain |
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Trigeminal nerve fibers |
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Rostral anterior cingulate cortex |
Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine). |
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Lateral lemniscus |
A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). |
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Posterior part of anterior commissure |
The main part of the anterior commissure, distinct from the anterior olfactory part, that interconnects the temporal lobes. (Maryann Martone) |
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Regional part of substantia nigra pars reticulata |
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Regional part of cerebellar peduncular complex |
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Thoracic spinal cord gray matter |
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Paracentral nucleus |
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Dorsal raphe nucleus |
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Uncinate fasciculus |
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Regional part of frontal lobe |
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Predominantly white regional part of inferior colliculus |
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Dorsal longitudinal fasciculus |
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Cytoarchitectural part of the cerebellum |
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Predominantly gray lateral regional part of thalamus |
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Regional part of thoracic spinal cord gray matter |
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Substantia nigra pars compacta |
Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM). |
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Ventral acoustic stria |
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Dorsal tegmental nucleus |
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Regional part of pretectal region |
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Lateral eminence of hypophysis |
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Regional part of hypothalamus |
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Gross anatomical parts of the cerebellum |
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Predominantly gray regional part of lateral nuclear group |
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Anterior middle temporal sulcus |
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Thoracic spinal cord white matter |
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Trigeminal nucleus |
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Gustatory epithelium |
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Regional part of gustatory epithelium |
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Taste bud |
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Prefrontal cortex |
The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social "control" (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia |
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Neural system |
A set of neural structures that subserve a specific function, e.g., visual system |
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Gustatory system |
The sensory system for the sense of taste. |
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Motor system |
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Olfactory system |
The sensory system used for olfaction, or the sense of smell. Most mammals and reptiles have two distinct parts to their olfactory system: a main olfactory system and an accessory olfactory system. The main olfactory system detects volatile, airborne substances, while the accessory olfactory system senses fluid-phase stimuli. Behavioral evidence indicates that most often, the stimuli detected by the accessory olfactory system are pheromones.nnThe olfactory system is often spoken of along with the gustatory system as the chemosensory senses because both transduce chemical signals into perception. - definition adapted from Wikipedia |
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Neocortex layer 1 |
The most superficial layer of the neocortex characterized by a paucity of cell bodies. |
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Neocortex layer 2 |
Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies. |
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Neocortex layer 3 |
Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons. |
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Neocortex layer 4 |
Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells |
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Neocortex layer 5 |
Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies |
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Neocortex layer 6 |
Innermost layer of neocortex lying deep to the internal pyramidal cell layer defined cytoarchitecturally by cells of varying size. |
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Proprioceptive system |
The sensory system for the sense of proprioception. |
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Sensorimotor |
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Sensory system |
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Auditory system |
The sensory system for the sense of hearing. |
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Somatosensory system |
The sensory system for the sense of touch and pain. |
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Vestibular system |
The sensory system for the sense of balance. |
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Blood vessel |
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Capillary |
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Corona radiata |
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Parasubiculum |
A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info) |
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Piriform cortex layer 1 |
Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part. |
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Piriform cortex layer 1a |
Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract. |
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Piriform cortex layer 1b |
Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas |
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Piriform cortex layer 2 |
Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part |
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Piriform cortex layer 2a |
Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies |
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Piriform cortex layer 2b |
Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies. |
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Piriform cortex layer 3 |
Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2. |
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Endopiriform nucleus |
An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. nAccording to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum. |
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Regional Parts of the Hemisphere Lobules |
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Hemispheric Lobule II |
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Hemispheric Lobule III |
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Hemispheric Lobule IV |
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Hemispheric Lobule V |
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Hemispheric Lobule VI |
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Hemispheric Lobule VII |
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Hemispheric Lobule VIIA |
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Hemispheric Lobule VIIBi |
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Hemispheric Lobule VIIBii |
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Hemispheric Lobule VIII |
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Hemispheric Lobule IX |
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Hemispheric Lobule X |
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Regional Parts of the Paravermal Lobules |
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Paravermic Lobule II |
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Paravermic Lobule III |
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Paravermic Lobule IV |
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Paravermic Lobule IX |
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Paravermic Lobule V |
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Paravermic Lobule VI |
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Paravermic Lobule VII |
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Paravermic Lobule VIII |
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Regional Parts of the Vermal Lobules |
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Vermic Lobule I |
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Vermic Lobule II |
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Vermic Lobule III |
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Vermic Lobule IV |
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Vermic Lobule V |
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Vermic Lobule VI |
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Vermic Lobule VII |
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Vermic Lobule VIIA |
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Vermic Lobule VIIB |
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Vermic Lobule VIII |
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Vermic Lobule IX |
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Vermic Lobule X |
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Cerebellar Paravermis |
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Paravermis parts of the cerebellar cortex |
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Paravermis of the posterior lobe of the cerebellum |
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Paravermis of the anterior lobe of the cerebellum |
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Vermis of the posterior lobe of the cerebellum |
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Vermis of the flocculonodular lobe of the cerebellum |
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Interpositus Nucleus |
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Regional Parts of the Interpositus Nucleus |
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Lateral reticular nucleus |
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Rostral portion of the medial accessory olive |
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Convoluted olive |
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White matter of the cerebellar cortex |
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Superficial feature part of the cerebellum |
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Precentral fissure |
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Precentral fissure |
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Primary fissure |
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Posterior superior fIssure |
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Horizontal fissure |
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Ansoparamedian fissure |
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Prepyramidal fissure |
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Secondary fissure |
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Posterolateral fissure |
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Hemispheric part of the flocculonodular lobe of the cerebellum |
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Hemispheric part of the posterior lobe of the cerebellum |
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Arbor Vitae |
The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae. |
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Clarke's Nuclei |
Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments. |
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Raphe Nuclei |
The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane. |
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Regional part of spinal nerve |
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Cervical spinal nerve |
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Dorsal root |
The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion). |
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Ventral root |
The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion. |
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Retrorubral area |
The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus. |
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Regional part of diagonal band |
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Horizontal limb of the diagonal band |
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Vertical limb of the diagonal band |
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Regional part of nucleus accumbens |
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Core of nucleus accumbens |
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Shell of nucleus accumbens |
Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell. |
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Middle temporal area |
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Regional part of supraoptic nucleus |
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Principal anterior division of supraoptic nucleus |
One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus. |
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Tuberal supraoptic nucleus |
Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm. |
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Circumventricular organ |
Regional parts of brain located around or in rleation to the ventricular system that are highly vascularized and distinguished by the lack of a blood brain barrier. |
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Regional part of stratum lucidum |
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Cytoarchitectural part of olfactory bulb |
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External plexiform layer |
Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs. |
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Granule layer of main olfactory bulb |
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Plexiform layer |
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Cytoarchitectural part of dorsal tegmental nucleus |
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Dorsal tegmental nucleus pars dorsalis |
Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. |
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Dorsal tegmental nucleus pars ventralis |
Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. |
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Olfactory bulb accessory nucleus |
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Chemoarchitectural part |
Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture. |
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Extrastriate cortex |
A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990). |
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Chemoarchitectural part of neostriatum |
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Matrix compartment |
The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K. |
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Matrix compartment of caudate nucleus |
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Matrix compartment of putamen |
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Striosome |
One of two compartments identified in the neostriatum, particularly the caudate nucleus, on the basis of differential staining for several biochemical markers such as acetylcholinesterase and calbindin. In individual sections, the striosomes appear as small patches of differentially high or low staining activity. In three dimensions, they form a 3D labyrinth extending throughout the caudate nucleus and in the putamen. |
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Striosomal part of caudate nucleus |
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Striosomal part of putamen |
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Aggregate regional part of brain |
A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia. |
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Regional part of dorsal cochlear nucleus |
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Cytoarchitectural part of dorsal cochlear nucleus |
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Granular cell layer of dorsal cochlear nucleus |
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Commissure |
White matter fiber bundle that crosses the midline of the brain or spinal cord. |
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Frontal cortex |
Anterior portion of the frontal cortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally. |
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Finger |
Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger. |
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Hand |
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Molecular layer of entorhinal cortex |
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Pyramidal layer of entorhinal cortex |
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Cytoarchitecture of entorhinal cortex |
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Basis Pontis |
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http://www.obofoundry.org/ro/ro.owl#contained_in |
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http://www.obofoundry.org/ro/ro.owl#has_proper_part |
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http://www.obofoundry.org/ro/ro.owl#integral_part_of |
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http://www.obofoundry.org/ro/ro.owl#located_in |
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http://www.obofoundry.org/ro/ro.owl#proper_part_of |
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